R3HCC1

General Information

Gene Name       : R3HCC1
Gene ID             : ENSG00000104679.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: R3HCC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878R3HCC1ENSG00000104679.105.0011.728.36ENCSR000AEF
HepG2R3HCC1ENSG00000104679.1017.7111.9314.82ENCSR985KAT
K562R3HCC1ENSG00000104679.1020.0813.8716.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for R3HCC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • R3HCC1 RNA is bound by 3 proteins.  







eCLIP assay for R3HCC1 is not avaliable on ENCORE database.





3 proteins are bound to R3HCC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr82314603523146117+5'-UTR,CDS4.092726.02664K562DDX3X
chr82314899923149091+CDS,intron-Proximal4.827995.68502HepG2PRPF8
chr82315344723153528+CDS,intron-Proximal4.430986.77156K562AQR
chr82315242423152502+intron-Distal,intron-Proximal3.892344.49024K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for R3HCC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for R3HCC1 is not available on ENCORE database.

  • 75 RBPs can affect the levels of R3HCC1.  








The Knockdown/knockout RNA-Seq assay for R3HCC1 is not available on ENCORE database.





75 RBPs can affect the gene expression of R3HCC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
R3HCC1ENSG00000104679.6246.01750164.526900.580302.475701.53180HepG2ADAR
R3HCC1ENSG00000104679.6657.52480459.911800.515602.269501.78260HepG2AKAP1
R3HCC1ENSG00000104679.6393.82770299.049800.397101.931801.42440HepG2BOP1
R3HCC1ENSG00000104679.6524.98350361.528500.538103.357902.51110HepG2CIRBP
R3HCC1ENSG00000104679.6385.03710291.417200.401802.526101.90680HepG2CELF1
R3HCC1ENSG00000104679.6435.75680313.319700.475803.900703.04450HepG2DAZAP1
R3HCC1ENSG00000104679.6681.13290440.529300.628604.665803.87040HepG2DDX3X
R3HCC1ENSG00000104679.6426.39050278.132800.616305.122504.25230HepG2DKC1
R3HCC1ENSG00000104679.6241.87260164.236200.558401.880301.32460HepG2DNAJC2
R3HCC1ENSG00000104679.6267.48500363.78560-0.443601.970701.46080HepG2EIF2S1
R3HCC1ENSG00000104679.6606.02970401.990300.592103.600002.87320HepG2EIF4A3
R3HCC1ENSG00000104679.6249.78110391.46190-0.648203.047602.32830HepG2EIF4B
R3HCC1ENSG00000104679.6310.27100192.665400.687303.462802.31570HepG2GNB2L1
R3HCC1ENSG00000104679.6280.34760167.236200.745204.101003.33750HepG2HNRNPA1
R3HCC1ENSG00000104679.6272.59210381.15860-0.483602.444401.78590HepG2HNRNPK
R3HCC1ENSG00000104679.6262.33860184.804800.505302.313001.75410HepG2HNRNPU
R3HCC1ENSG00000104679.6775.09390434.566700.834706.735905.42520HepG2LARP4
R3HCC1ENSG00000104679.6574.42810405.841100.501103.020802.33590HepG2MAGOH
R3HCC1ENSG00000104679.6204.49980314.69330-0.621803.751602.33760HepG2NAA15
R3HCC1ENSG00000104679.6232.85960135.838500.777503.201601.48220HepG2PA2G4
R3HCC1ENSG00000104679.6224.37850150.295300.578002.697701.48160HepG2PKM
R3HCC1ENSG00000104679.6266.60020164.828200.693602.320601.63900HepG2PPIL4
R3HCC1ENSG00000104679.6437.93370296.586400.562202.345701.79040HepG2PUF60
R3HCC1ENSG00000104679.6397.85200314.847800.337502.298201.74770HepG2PUM1
R3HCC1ENSG00000104679.6402.76530314.612700.356301.931501.36500HepG2PUM2
R3HCC1ENSG00000104679.6386.16050296.114400.382902.431301.84360HepG2PUS1
R3HCC1ENSG00000104679.6188.04610420.42170-1.1608012.9000011.69450HepG2QKI
R3HCC1ENSG00000104679.6326.22900440.35280-0.432802.635402.12700HepG2RBM22
R3HCC1ENSG00000104679.6389.72560227.700600.775204.507703.22320HepG2RBM27
R3HCC1ENSG00000104679.6324.32200176.855700.874806.348105.45820HepG2RPS19
R3HCC1ENSG00000104679.6310.63180209.979900.564902.383501.63590HepG2RPS2
R3HCC1ENSG00000104679.6280.48100167.501500.743603.553502.64570HepG2RPS3A
R3HCC1ENSG00000104679.6273.65610177.475000.624602.897901.93540HepG2SERBP1
R3HCC1ENSG00000104679.6590.07780394.980600.579003.466702.70920HepG2SF3A3
R3HCC1ENSG00000104679.6217.52030343.19240-0.657905.281804.56280HepG2SRSF9
R3HCC1ENSG00000104679.6572.92570431.852300.407703.556902.99190HepG2SSB
R3HCC1ENSG00000104679.6425.00830333.037900.351702.342101.76110HepG2SUCLG1
R3HCC1ENSG00000104679.6178.21100268.08030-0.589102.694602.02550HepG2SUPV3L1
R3HCC1ENSG00000104679.6187.86590379.16240-1.0131010.108709.14480HepG2TAF15
R3HCC1ENSG00000104679.6474.71020282.952100.746402.868401.78420HepG2TBRG4
R3HCC1ENSG00000104679.6225.75310348.41040-0.626004.346003.30680HepG2TIA1
R3HCC1ENSG00000104679.6350.03300179.509800.963308.773107.97290HepG2TIAL1
R3HCC1ENSG00000104679.6394.16950289.765800.443802.541001.70670HepG2TUFM
R3HCC1ENSG00000104679.6573.32980338.189200.761409.536708.53350HepG2UTP3
R3HCC1ENSG00000104679.6725.24350595.486300.284302.038801.53740K562AGGF1
R3HCC1ENSG00000104679.6866.33200654.326000.404803.102002.04690K562AKAP8
R3HCC1ENSG00000104679.61227.75030795.174000.626603.886103.21410K562AQR
R3HCC1ENSG00000104679.6601.30600380.765000.659105.632903.98760K562CCAR1
R3HCC1ENSG00000104679.61162.27350852.678600.446805.959205.05510K562DDX47
R3HCC1ENSG00000104679.6583.49540426.286100.452802.912701.54610K562DHX30
R3HCC1ENSG00000104679.6568.76810387.295800.554302.553701.59090K562EIF3A
R3HCC1ENSG00000104679.6379.39980243.346600.640604.844603.80660K562EIF3G
R3HCC1ENSG00000104679.6546.06150319.784300.771907.421906.08350K562EIF4A3
R3HCC1ENSG00000104679.6942.73890733.040300.362902.570601.75430K562FIP1L1
R3HCC1ENSG00000104679.6647.40600332.561900.9609014.1591012.89370K562FXR1
R3HCC1ENSG00000104679.680.20150186.76570-1.219506.365605.19560K562G3BP2
R3HCC1ENSG00000104679.61455.97700932.179000.643208.503307.16400K562GRSF1
R3HCC1ENSG00000104679.6653.84580385.497700.762107.772206.81860K562HNRNPC
R3HCC1ENSG00000104679.6905.01880602.910100.585904.588703.36380K562HNRNPM
R3HCC1ENSG00000104679.6544.47000300.440400.857709.458507.84450K562MAGOH
R3HCC1ENSG00000104679.6435.94610299.809200.540003.897502.78750K562MATR3
R3HCC1ENSG00000104679.6814.71660625.308000.381603.917102.96930K562MTPAP
R3HCC1ENSG00000104679.6604.00620388.174900.637804.667703.69470K562PRPF8
R3HCC1ENSG00000104679.6516.21880345.650100.578602.259201.45000K562PSIP1
R3HCC1ENSG00000104679.6485.11850291.907300.732707.067606.04310K562PTBP1
R3HCC1ENSG00000104679.61275.190101037.526100.297502.097801.38660K562PUF60
R3HCC1ENSG00000104679.61341.933601081.277700.311502.899101.91730K562PUM2
R3HCC1ENSG00000104679.6820.31430614.539000.416602.629602.09670K562PUS1
R3HCC1ENSG00000104679.6547.81010395.341100.470502.378801.62330K562RPS19
R3HCC1ENSG00000104679.6407.02700298.998800.444902.401701.46330K562SRFBP1
R3HCC1ENSG00000104679.6527.16760286.182500.881209.265607.98330K562SRSF1
R3HCC1ENSG00000104679.6440.80700315.667100.481602.760801.71130K562SRSF4
R3HCC1ENSG00000104679.6641.54050961.83370-0.584205.539203.57200K562SSRP1
R3HCC1ENSG00000104679.6651.09260879.74600-0.434203.097701.76130K562STAU1
R3HCC1ENSG00000104679.6781.94360589.396000.407703.400302.49170K562SYNCRIP
R3HCC1ENSG00000104679.6552.54380289.600900.931909.561608.12260K562TARDBP
R3HCC1ENSG00000104679.6446.92960279.361800.677805.473704.26260K562TIA1
R3HCC1ENSG00000104679.6502.75860332.451100.596602.311601.46170K562TIAL1
R3HCC1ENSG00000104679.6403.19990274.218700.556103.479502.22550K562TRA2A
R3HCC1ENSG00000104679.6482.84860353.245900.450802.786601.83660K562TRIM56
R3HCC1ENSG00000104679.6648.46390857.65090-0.403402.900701.47400K562TRIP6
R3HCC1ENSG00000104679.6870.49840736.674400.240701.921401.31450K562UPF1
R3HCC1ENSG00000104679.6874.14320655.496400.415205.000403.89350K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for R3HCC1 is not available on ENCORE database.





1 RBPs can affect the splicing of R3HCC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSR3HCC1ENSG00000104679.6chr8+2315345223153634231534792315363423152281231523770.170000.000000.00000longerK562AQR
A5SSR3HCC1ENSG00000104679.6chr8+2314784723148024231478472314798223148873231490460.152000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for R3HCC1 is not avaliable on ENCORE database.