PHF11

General Information

Gene Name       : PHF11
Gene ID             : ENSG00000136147.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF11ENSG00000136147.1740.7734.1137.44ENCSR000AEF
HepG2PHF11ENSG00000136147.176.5811.098.84ENCSR985KAT
K562PHF11ENSG00000136147.174.704.684.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PHF11Ribo-STAMP-293TshRNAPHF11-BGRSLV02-33,PHF11-BGRSLV02-34NT-BGRSLV02-1,NT-BGRSLV02-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF11 RNA is bound by 3 proteins.  







eCLIP assay for PHF11 is not avaliable on ENCORE database.





3 proteins are bound to PHF11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr135009215350092206+CDS,intron-Proximal4.256603.06595HepG2BCLAF1
chr135008721550087275+CDS4.054103.38968HepG2BCLAF1
chr135009729350097344+CDS,intron-Proximal3.100163.05068HepG2U2AF2
chr135007985050079967+intron-Distal3.322323.59803HepG2PTBP1
chr135009527150095343+intron-Distal,intron-Proximal3.812535.18845HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF11 is not available on ENCORE database.

  • 39 RBPs can affect the levels of PHF11.  








The Knockdown/knockout RNA-Seq assay for PHF11 is not available on ENCORE database.





39 RBPs can affect the gene expression of PHF11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF11ENSG00000136147.12258.91240194.317400.413902.074201.53300HepG2ACO1
PHF11ENSG00000136147.12267.27410195.247900.452902.337701.62630HepG2AKAP8L
PHF11ENSG00000136147.12398.38680256.657300.634204.008603.19510HepG2CPSF6
PHF11ENSG00000136147.12217.50170149.749500.538402.295101.47190HepG2DDX24
PHF11ENSG00000136147.12285.65850166.455600.779104.270903.54310HepG2EIF2S1
PHF11ENSG00000136147.12210.74230109.435000.945305.372304.28730HepG2FUBP3
PHF11ENSG00000136147.12281.16680177.068200.667002.879301.74470HepG2GRSF1
PHF11ENSG00000136147.12194.00120131.904000.556501.994001.43500HepG2HNRNPA1
PHF11ENSG00000136147.12303.37070175.011900.793504.539403.69330HepG2IGF2BP2
PHF11ENSG00000136147.12226.53270148.878600.605503.634502.80400HepG2ILF2
PHF11ENSG00000136147.12210.43560112.688900.900903.686402.76970HepG2PRPF8
PHF11ENSG00000136147.12159.29530268.06200-0.750904.601303.85520HepG2PUF60
PHF11ENSG00000136147.12198.42590284.34350-0.519002.871402.18900HepG2PUM2
PHF11ENSG00000136147.12262.46100183.523900.516001.914801.38020HepG2QKI
PHF11ENSG00000136147.12275.43790181.666600.600301.985201.37830HepG2RAVER1
PHF11ENSG00000136147.12370.04330252.919600.548903.467102.90530HepG2RBM22
PHF11ENSG00000136147.12407.83410285.659400.513603.560203.01380HepG2SRFBP1
PHF11ENSG00000136147.12203.59770149.794500.442601.804901.34190HepG2SRSF9
PHF11ENSG00000136147.12316.30790248.012800.350801.767301.33470HepG2SSB
PHF11ENSG00000136147.12235.73280165.478800.510402.303901.78410HepG2TAF15
PHF11ENSG00000136147.12214.84290141.618500.601202.817002.31280HepG2TIAL1
PHF11ENSG00000136147.12185.92170277.13980-0.575902.190801.45070HepG2UBE2L3
PHF11ENSG00000136147.12332.10240224.218700.566603.756902.55340HepG2UTP18
PHF11ENSG00000136147.12221.96410143.224400.631901.964901.34640HepG2XRN2
PHF11ENSG00000136147.12194.50830135.837100.517902.302601.68330HepG2ZC3H8
PHF11ENSG00000136147.12319.50120239.908700.413202.493001.96560HepG2ZNF622
PHF11ENSG00000136147.12239.95590105.438401.186307.323305.88110K562BOP1
PHF11ENSG00000136147.12293.76400174.272300.753202.987701.87830K562CNOT7
PHF11ENSG00000136147.12192.53230112.105700.780103.117502.28360K562CPSF6
PHF11ENSG00000136147.12312.01040224.165700.476902.470401.54970K562CELF1
PHF11ENSG00000136147.12138.1304077.731500.829403.010701.82460K562FKBP4
PHF11ENSG00000136147.12184.43800114.075700.693002.752201.90080K562FMR1
PHF11ENSG00000136147.12174.7061096.694200.853303.676502.60860K562FTO
PHF11ENSG00000136147.12156.5480098.243400.672102.304701.66730K562G3BP2
PHF11ENSG00000136147.12209.24920112.933500.889604.174603.24950K562GRSF1
PHF11ENSG00000136147.12209.42460126.817600.723603.217002.36260K562HSPD1
PHF11ENSG00000136147.12169.9474091.401000.894703.272702.24890K562KRR1
PHF11ENSG00000136147.12293.72440211.583400.473102.472601.46770K562PUM1
PHF11ENSG00000136147.1274.60770154.38390-1.049102.918201.64550K562SNRNP200
PHF11ENSG00000136147.1257.94210101.21850-0.804802.301801.64950K562SRSF1
PHF11ENSG00000136147.12178.82960106.939800.741703.361902.40130K562WDR3
PHF11ENSG00000136147.12263.66640155.147100.765004.706603.53690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF11 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PHF11 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PHF11 is not avaliable on ENCORE database.