FGF13

General Information

Gene Name : FGF13
Gene ID : ENSG00000129682.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FGF13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FGF13	ENSG00000129682.15	0.22	0.46	0.34	ENCSR000AEF
HepG2	FGF13	ENSG00000129682.15	0.12	0.37	0.24	ENCSR985KAT
K562	FGF13	ENSG00000129682.15	48.80	53.45	51.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FGF13 is not avaliable on ENCORE database.

Proteins bound to RNA

FGF13 RNA is bound by 21 proteins.

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eCLIP assay for FGF13 is not avaliable on ENCORE database.

21 proteins are bound to FGF13 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	138066555	138066648	-	intron-Distal	6.75021	45.02242	K562	PTBP1
chrX	137749880	137749932	-	intron-Distal	6.68077	17.68908	K562	DGCR8
chrX	138011290	138011404	-	intron-Distal	4.50215	16.74478	K562	HNRNPL
chrX	138071800	138071887	-	intron-Distal	4.17374	14.45525	K562	KHSRP
chrX	138066558	138066659	-	intron-Distal	6.25210	14.44506	K562	MATR3
chrX	137995697	137995751	-	intron-Distal	6.22504	14.35804	K562	PTBP1
chrX	138063439	138063510	-	intron-Distal	5.61979	12.91978	K562	TARDBP
chrX	137714824	137714881	-	3'-UTR,intron-Distal	3.26039	11.44698	K562	YBX3
chrX	138033717	138033882	-	intron-Distal	3.39318	10.91514	K562	KHSRP
chrX	138285790	138285886	-	intron-Distal	5.28960	8.89278	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for FGF13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FGF13 is not available on ENCORE database.
44 RBPs can affect the levels of FGF13.

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The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.

44 RBPs can affect the gene expression of FGF13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FGF13	ENSG00000129682.9	248.08050	880.03290	-1.82670	30.59670	27.95560	K562	RPS19
FGF13	ENSG00000129682.9	527.12810	1299.31240	-1.30150	30.03560	27.72150	K562	SRSF1
FGF13	ENSG00000129682.9	511.77770	1474.61490	-1.52670	21.46000	18.76830	K562	SF3B1
FGF13	ENSG00000129682.9	1177.16310	1944.92270	-0.72440	17.28970	14.65590	K562	CPEB4
FGF13	ENSG00000129682.9	1280.67220	2012.34090	-0.65200	15.72870	14.29040	K562	DDX47
FGF13	ENSG00000129682.9	730.25690	1325.39600	-0.85990	15.49220	13.98610	K562	PTBP1
FGF13	ENSG00000129682.9	1378.69330	2343.23760	-0.76520	16.49800	13.80590	K562	PUM1
FGF13	ENSG00000129682.9	738.25310	1361.45810	-0.88300	15.88220	13.59020	K562	MATR3
FGF13	ENSG00000129682.9	874.96420	1317.58840	-0.59060	11.03180	9.53370	K562	MTPAP
FGF13	ENSG00000129682.9	1538.28660	2295.88610	-0.57770	11.33750	9.39110	K562	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 44 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.

3 RBPs can affect the splicing of FGF13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FGF13	ENSG00000129682.9	chrX	-	137939673	137939841	137790979	137791090	138286220	138286433	0.24500	0.00002	0.00884	included	K562	SBDS
SE	FGF13	ENSG00000129682.9	chrX	-	137939673	137939841	137790979	137791090	138286220	138286433	0.22200	0.00005	0.00626	included	K562	HNRNPL
SE	FGF13	ENSG00000129682.9	chrX	-	137939673	137939841	137790979	137791090	138286220	138286269	-0.15500	0.00101	0.01719	excluded	K562	PUS1

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FGF13

General Information

Functions

Localization

Domains (AlphaFold: FGF13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FGF13 is not avaliable on ENCORE database.

21 proteins are bound to FGF13 RNA:

eCLIP assay for FGF13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.

44 RBPs can affect the gene expression of FGF13 :

The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.

3 RBPs can affect the splicing of FGF13 :

The Knockdown/knockout RNA-Seq assay for FGF13 is not avaliable on ENCORE database.