CTC-338M12.9

General Information

Gene Name : CTC-338M12.9
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-338M12.9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-338M12.9 RNA is bound by 8 proteins.

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eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

8 proteins are bound to CTC-338M12.9 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	180709469	180709520	+	intron-Distal	7.15263	25.88746	K562	GTF2F1
chr5	180709472	180709520	+	intron-Distal	4.49274	16.07176	K562	CSTF2T
chr5	180709580	180709637	+	intron-Distal	6.18686	15.52065	K562	GTF2F1
chr5	180708875	180708942	+	intron-Distal	5.90363	14.89609	K562	GTF2F1
chr5	180709460	180709522	+	intron-Distal	5.69745	13.69120	K562	EWSR1
chr5	180709312	180709379	+	intron-Distal	5.05031	13.41992	K562	GTF2F1
chr5	180708873	180708979	+	intron-Distal	4.67322	12.70249	K562	CSTF2T
chr5	180709116	180709194	+	intron-Distal	5.77887	12.42155	K562	GTF2F1
chr5	180710060	180710143	+	intron-Distal	4.33032	10.26462	K562	CSTF2T
chr5	180709588	180709644	+	intron-Distal	5.39808	10.24558	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 36 entries

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-338M12.9 is not available on ENCORE database.
32 RBPs can affect the levels of CTC-338M12.9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

32 RBPs can affect the gene expression of CTC-338M12.9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-338M12.9	ENSG00000248103.1	67.97690	222.05010	-1.70780	13.90250	12.56700	K562	RBM15
CTC-338M12.9	ENSG00000248103.1	99.63520	263.92800	-1.40540	12.66050	10.14830	K562	CCDC124
CTC-338M12.9	ENSG00000248103.1	80.13560	227.91200	-1.50800	10.80590	9.78040	K562	PUS1
CTC-338M12.9	ENSG00000248103.1	97.65230	247.29180	-1.34050	11.79390	9.73270	K562	DKC1
CTC-338M12.9	ENSG00000248103.1	68.46040	233.44420	-1.76970	12.45610	9.66110	K562	MAK16
CTC-338M12.9	ENSG00000248103.1	4.99960	59.95620	-3.58400	10.59860	9.03870	K562	G3BP2
CTC-338M12.9	ENSG00000248103.1	105.76390	241.10450	-1.18880	9.50700	7.68490	K562	ATP5C1
CTC-338M12.9	ENSG00000248103.1	116.51970	273.20430	-1.22940	9.20160	7.35280	K562	MBNL1
CTC-338M12.9	ENSG00000248103.1	111.97560	242.66210	-1.11580	7.96830	6.06180	K562	AKAP8
CTC-338M12.9	ENSG00000248103.1	111.81490	229.79430	-1.03920	6.56550	5.52750	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-338M12.9 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	0.16000	0.00000	0.00017	included	K562	SBDS
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	0.15800	0.00030	0.02557	included	K562	HNRNPL
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	-0.23100	0.00132	0.09371	excluded	K562	XRCC6

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-338M12.9

General Information

Functions

Localization

Domains (AlphaFold: CTC-338M12.9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

8 proteins are bound to CTC-338M12.9 RNA:

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

32 RBPs can affect the gene expression of CTC-338M12.9 :

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-338M12.9 :

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not avaliable on ENCORE database.