CNKSR1

General Information

Gene Name       : CNKSR1
Gene ID             : ENSG00000142675.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNKSR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNKSR1ENSG00000142675.170.070.560.32ENCSR000AEF
HepG2CNKSR1ENSG00000142675.175.233.974.60ENCSR985KAT
K562CNKSR1ENSG00000142675.171.561.371.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNKSR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNKSR1 RNA is bound by 4 proteins.  







eCLIP assay for CNKSR1 is not avaliable on ENCORE database.





4 proteins are bound to CNKSR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12651073226510778+3'-UTR,5'-UTR,CDS4.127123.79199HepG2PPIG
chr12650885026508897+3'-UTR,5'-UTR,CDS,intron-Proximal3.673686.13978HepG2PPIG
chr12651060826510717+3'-UTR,5'-UTR,CDS,intron-Proximal3.511205.73990HepG2PRPF8
chr12651065526510702+CDS,intron-Proximal4.286824.82767HepG2SF3B4
chr12651040926510519+intron-Distal,intron-Proximal4.023553.06084HepG2HNRNPK
chr12650996226510022+intron-Distal,intron-Proximal3.989503.56713HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNKSR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNKSR1 is not available on ENCORE database.

  • 76 RBPs can affect the levels of CNKSR1.  








The Knockdown/knockout RNA-Seq assay for CNKSR1 is not available on ENCORE database.





76 RBPs can affect the gene expression of CNKSR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNKSR1ENSG00000142675.13286.45660168.779200.763105.864105.04340HepG2ACO1
CNKSR1ENSG00000142675.13192.84280126.119900.612501.941201.48650HepG2AKAP1
CNKSR1ENSG00000142675.13286.67230169.546100.757605.581004.52550HepG2AKAP8L
CNKSR1ENSG00000142675.13170.25840104.341900.706302.581601.82120HepG2ASCC1
CNKSR1ENSG00000142675.13230.75750116.674100.983804.500003.30430HepG2BCCIP
CNKSR1ENSG00000142675.13172.1942099.135800.796503.148502.32550HepG2CIRBP
CNKSR1ENSG00000142675.13337.48850168.711101.0002010.494509.36980HepG2CKAP4
CNKSR1ENSG00000142675.13278.28340188.972900.558303.454502.75350HepG2CELF1
CNKSR1ENSG00000142675.13266.76230120.788201.143007.168206.20580HepG2DDX3X
CNKSR1ENSG00000142675.13206.79240114.715600.850003.345202.50480HepG2DDX55
CNKSR1ENSG00000142675.13166.66090103.818600.682802.285901.71920HepG2DDX6
CNKSR1ENSG00000142675.13186.20480119.591300.638702.986002.26020HepG2DNAJC21
CNKSR1ENSG00000142675.13169.99660118.562300.519802.260401.65820HepG2DNAJC2
CNKSR1ENSG00000142675.13308.6089099.744801.6294014.1251012.85430HepG2EIF2S1
CNKSR1ENSG00000142675.13225.06280110.201401.030105.522804.62070HepG2EIF4A3
CNKSR1ENSG00000142675.13191.96250107.350600.838403.024202.30800HepG2EIF4B
CNKSR1ENSG00000142675.13417.39440285.533100.547703.248502.60560HepG2ETF1
CNKSR1ENSG00000142675.13516.84440257.726701.003807.337506.14700HepG2FIP1L1
CNKSR1ENSG00000142675.13240.91000111.274301.114306.677205.63100HepG2FXR1
CNKSR1ENSG00000142675.13257.64610103.178101.320209.333408.14690HepG2G3BP1
CNKSR1ENSG00000142675.13179.31420109.595700.710202.689701.81370HepG2G3BP2
CNKSR1ENSG00000142675.13225.55620118.635400.926904.775703.43630HepG2GNB2L1
CNKSR1ENSG00000142675.13307.22180160.781000.934105.578904.69130HepG2GPKOW
CNKSR1ENSG00000142675.13273.13230120.737301.177608.277907.24640HepG2HNRNPA1
CNKSR1ENSG00000142675.13327.59100104.582501.6472015.3618013.85540HepG2HNRNPK
CNKSR1ENSG00000142675.13308.08870133.418301.2073012.8070011.58070HepG2HNRNPU
CNKSR1ENSG00000142675.13225.63180104.862301.105406.230705.25500HepG2IGF2BP2
CNKSR1ENSG00000142675.13207.94660136.280800.609503.532302.71330HepG2ILF2
CNKSR1ENSG00000142675.13184.04000105.503500.802602.930301.89380HepG2KHSRP
CNKSR1ENSG00000142675.13196.98400122.034200.690702.830901.60330HepG2LIN28B
CNKSR1ENSG00000142675.13224.83900111.922601.006304.930304.10890HepG2MATR3
CNKSR1ENSG00000142675.13284.23880114.547701.311109.283808.16370HepG2NCBP2
CNKSR1ENSG00000142675.13165.30020101.960100.697002.545101.85000HepG2PABPC4
CNKSR1ENSG00000142675.13243.73170103.189901.2399010.429609.37270HepG2PCBP1
CNKSR1ENSG00000142675.13284.44760109.603501.375809.644007.84820HepG2PCBP2
CNKSR1ENSG00000142675.13207.93450118.996900.805104.798903.85480HepG2PPIL4
CNKSR1ENSG00000142675.13242.3448088.490101.453409.327107.94370HepG2PRPF8
CNKSR1ENSG00000142675.13213.51690104.998401.023906.498105.72840HepG2PTBP1
CNKSR1ENSG00000142675.13346.22610204.002800.763005.939104.97010HepG2PUM2
CNKSR1ENSG00000142675.13176.55880113.718400.634602.476001.87950HepG2QKI
CNKSR1ENSG00000142675.13309.44470221.327400.483402.512301.69160HepG2RBM15
CNKSR1ENSG00000142675.13226.00970103.205801.130807.427406.36660HepG2RBM25
CNKSR1ENSG00000142675.13211.58190116.854100.856403.786203.17230HepG2NELFE
CNKSR1ENSG00000142675.13190.27010108.831900.805803.983203.26090HepG2RECQL
CNKSR1ENSG00000142675.13221.11050130.570500.759802.966002.33330HepG2RPS19
CNKSR1ENSG00000142675.13185.8589087.534601.086204.842703.83510HepG2RRP9
CNKSR1ENSG00000142675.13298.43710208.918600.514402.062901.47960HepG2SF3A3
CNKSR1ENSG00000142675.13248.80780109.319001.186409.005008.03130HepG2SF3B4
CNKSR1ENSG00000142675.13168.07320107.866300.639702.283001.42290HepG2SMNDC1
CNKSR1ENSG00000142675.13491.81040269.548300.8675010.491109.68510HepG2SRFBP1
CNKSR1ENSG00000142675.13162.26940114.104500.507901.730601.33210HepG2SRSF1
CNKSR1ENSG00000142675.13179.8361092.829300.953905.670104.92910HepG2SRSF9
CNKSR1ENSG00000142675.13180.44180114.196500.659902.037701.44440HepG2SUPV3L1
CNKSR1ENSG00000142675.13400.88660248.277000.691102.424101.42210HepG2TBRG4
CNKSR1ENSG00000142675.13172.6957094.240500.873704.411903.36430HepG2TIA1
CNKSR1ENSG00000142675.13325.91800129.607101.3303013.9272012.95430HepG2TIAL1
CNKSR1ENSG00000142675.13208.66490130.801800.673703.502302.88380HepG2TRIM56
CNKSR1ENSG00000142675.13370.23110220.424100.748004.571703.77460HepG2U2AF1
CNKSR1ENSG00000142675.13337.72280119.294801.501204.756103.43820HepG2U2AF2
CNKSR1ENSG00000142675.13189.84260112.414000.755902.773702.04800HepG2XRN2
CNKSR1ENSG00000142675.13108.7952043.501301.322405.425903.83390K562CCAR1
CNKSR1ENSG00000142675.1378.7449042.144700.901702.634001.34670K562DDX27
CNKSR1ENSG00000142675.13206.6141080.191601.365305.480004.60810K562DDX47
CNKSR1ENSG00000142675.13102.0344052.006400.972203.033002.07580K562EFTUD2
CNKSR1ENSG00000142675.13123.2944044.250201.478304.828003.45920K562EIF3A
CNKSR1ENSG00000142675.13125.3246055.689801.170104.445703.09800K562EIF3D
CNKSR1ENSG00000142675.13123.9001074.060200.742302.655201.41780K562EXOSC5
CNKSR1ENSG00000142675.13133.6653068.107100.972602.980801.35000K562HNRNPAB
CNKSR1ENSG00000142675.13144.1104032.641202.1423012.1323010.95680K562HNRNPC
CNKSR1ENSG00000142675.13104.1870029.159601.837007.929605.91460K562HNRNPF
CNKSR1ENSG00000142675.13243.4047077.906601.6434015.1448011.75870K562HNRNPH1
CNKSR1ENSG00000142675.13249.5507068.333901.8686019.3209017.08750K562HNRNPU
CNKSR1ENSG00000142675.13171.7458069.420701.306708.005206.69600K562MTPAP
CNKSR1ENSG00000142675.1375.8922032.155201.238803.319101.70660K562NUSAP1
CNKSR1ENSG00000142675.1366.8833029.269301.192202.443801.59910K562PSIP1
CNKSR1ENSG00000142675.1357.7128022.640801.349903.593002.84730K562PTBP1
CNKSR1ENSG00000142675.1350.4767017.939401.492402.414201.48670K562RPS3
CNKSR1ENSG00000142675.1327.162709.281001.549202.249501.48040K562SF3B4
CNKSR1ENSG00000142675.1375.9002025.327501.583302.790501.76070K562SRFBP1
CNKSR1ENSG00000142675.1391.2514022.197602.039308.335907.11540K562SRSF1
CNKSR1ENSG00000142675.1370.0740028.150401.315603.211402.19730K562TIAL1
CNKSR1ENSG00000142675.1329.3711069.99910-1.252903.399102.43190K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNKSR1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CNKSR1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CNKSR1 is not avaliable on ENCORE database.