CA5BP1

General Information

Gene Name : CA5BP1
Gene ID : ENSG00000186312.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CA5BP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CA5BP1	ENSG00000186312.10	6.62	7.47	7.04	ENCSR000AEF
HepG2	CA5BP1	ENSG00000186312.10	10.90	6.00	8.45	ENCSR985KAT
K562	CA5BP1	ENSG00000186312.10	18.48	14.37	16.43	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CA5BP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CA5BP1 RNA is bound by 4 proteins.

CanvasJS.com

eCLIP assay for CA5BP1 is not avaliable on ENCORE database.

4 proteins are bound to CA5BP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	15718992	15719091	+	intron-Distal	4.90588	8.50955	K562	QKI
chrX	15714419	15714521	+	intron-Distal	3.24536	3.69083	K562	PTBP1
chrX	15717150	15717208	+	intron-Distal	3.69509	3.08967	K562	KHDRBS1
chrX	15718791	15718856	+	intron-Distal	3.60553	3.01412	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for CA5BP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CA5BP1 is not available on ENCORE database.
46 RBPs can affect the levels of CA5BP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.

46 RBPs can affect the gene expression of CA5BP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CA5BP1	ENSG00000186312.6	856.32430	306.61300	1.48160	24.87930	23.30950	K562	AQR
CA5BP1	ENSG00000186312.6	642.07290	345.13760	0.89550	13.44090	12.11460	K562	DDX47
CA5BP1	ENSG00000186312.6	247.60750	118.20250	1.06670	8.12270	7.18390	HepG2	UTP3
CA5BP1	ENSG00000186312.6	293.11850	138.05230	1.08620	7.06310	5.95150	HepG2	SF3A3
CA5BP1	ENSG00000186312.6	135.72740	50.77030	1.41860	6.85950	5.83770	HepG2	RBM25
CA5BP1	ENSG00000186312.6	211.67310	107.74600	0.97410	6.39040	5.41620	K562	PTBP1
CA5BP1	ENSG00000186312.6	314.58070	172.02080	0.87070	5.89620	5.05630	K562	HNRNPC
CA5BP1	ENSG00000186312.6	224.83740	104.10970	1.11070	5.79500	4.90310	HepG2	U2AF1
CA5BP1	ENSG00000186312.6	139.71810	58.02360	1.26770	5.50540	4.58950	HepG2	MAGOH
CA5BP1	ENSG00000186312.6	293.95340	157.64540	0.89880	5.94430	4.44020	K562	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 54 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.

8 RBPs can affect the splicing of CA5BP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	-0.40500	0.00000	0.00001	excluded	K562	AGGF1
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15720904	15721847	-0.67400	0.00003	0.00112	excluded	HepG2	U2AF1
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15720904	15721847	-0.38400	0.00014	0.00321	excluded	K562	PUS1
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	-0.31700	0.00033	0.03011	excluded	K562	HNRNPUL1
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	0.27400	0.00072	0.08483	included	K562	HNRNPM
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	-0.27800	0.00243	0.05328	excluded	K562	RBM15
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	0.24400	0.00247	0.07917	included	K562	PTBP1
SE	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711181	15706783	15706981	15715362	15715583	-0.25500	0.00381	0.06627	excluded	K562	U2AF1
A5SS	CA5BP1	ENSG00000186312.6	chrX	+	15711085	15711286	15711085	15711181	15715362	15715583	0.15500	0.00420	0.06272	longer	K562	AQR
A3SS	CA5BP1	ENSG00000186312.6	chrX	+	15706763	15706981	15706783	15706981	15693837	15693901	0.11300	0.00462	0.02696	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CA5BP1

General Information

Functions

Localization

Domains (AlphaFold: CA5BP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CA5BP1 is not avaliable on ENCORE database.

4 proteins are bound to CA5BP1 RNA:

eCLIP assay for CA5BP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.

46 RBPs can affect the gene expression of CA5BP1 :

The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.

8 RBPs can affect the splicing of CA5BP1 :

The Knockdown/knockout RNA-Seq assay for CA5BP1 is not avaliable on ENCORE database.