RP5-857K21.4

General Information

Gene Name       : RP5-857K21.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP5-857K21.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP5-857K21.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP5-857K21.4 RNA is bound by 13 proteins.  







eCLIP assay for RP5-857K21.4 is not avaliable on ENCORE database.





13 proteins are bound to RP5-857K21.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1564875564879-intron-Distal4.742263.76991K562TBRG4
chr1569896569978-intron-Distal3.383277.66123K562WRN
chr1568777568818-intron-Distal4.896055.82084HepG2GRSF1
chr1628541628616-intron-Distal5.6252922.06391K562MATR3
chr1567889567946-intron-Distal3.784863.02525HepG2GRSF1
chr1568367568420-intron-Distal4.492384.96498HepG2GRSF1
chr1569934569938-intron-Distal8.94111400.00000HepG2GRSF1
chr1569892569983-intron-Distal4.2712545.86366K562ILF3
chr1568921568993-intron-Distal5.745906.42144K562FASTKD2
chr1569006569043-intron-Distal5.683146.29880K562FASTKD2
chr1569892569934-intron-Distal9.17287400.00000HepG2GRSF1
chr1569894569984-intron-Distal6.20557400.00000HepG2SUPV3L1
chr1569899569983-intron-Distal3.0582111.66718K562DDX52
chr1569891569982-intron-Distal6.34522400.00000HepG2DHX30
chr1569938569940-intron-Distal9.10266400.00000HepG2GRSF1
chr1569893569932-intron-Distal4.8551078.91233K562FASTKD2
chr1569894569986-intron-Distal3.4425111.64348K562ZC3H11A
chr1569893569982-intron-Distal5.97056400.00000HepG2FASTKD2
chr1569932569983-intron-Distal4.6536680.68924K562FASTKD2
chr1546778546822-intron-Distal5.4759310.16517K562AGGF1
chr1569897569983-intron-Distal6.69702400.00000K562DHX30
chr1569940569982-intron-Distal9.14533400.00000HepG2GRSF1
chr1569898569999-intron-Distal3.124385.70445K562TBRG4
chr1565615565743-intron-Distal4.188544.00698HepG2GRSF1
chr1569897569985-intron-Distal3.3634921.37641K562MTPAP
chr1564879564914-intron-Distal4.805024.16086K562TBRG4
chr1569895569984-intron-Distal7.6913517.62757K562SUPV3L1
chr1628549628617-intron-Distal4.3520322.05346K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP5-857K21.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP5-857K21.4 is not available on ENCORE database.

  • 4 RBPs can affect the levels of RP5-857K21.4.  








The Knockdown/knockout RNA-Seq assay for RP5-857K21.4 is not available on ENCORE database.





4 RBPs can affect the gene expression of RP5-857K21.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP5-857K21.4ENSG00000230021.31.6492014.67470-3.153501.963801.50630HepG2AKAP1
RP5-857K21.4ENSG00000230021.311.9443029.93310-1.325401.986401.41320HepG2SF3A3
RP5-857K21.4ENSG00000230021.3137.7551069.302600.991003.273202.10110K562CNOT7
RP5-857K21.4ENSG00000230021.3103.0556060.952200.757602.199201.33080K562CELF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP5-857K21.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP5-857K21.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP5-857K21.4 is not avaliable on ENCORE database.