MSANTD3-TMEFF1

General Information

Gene Name       : MSANTD3-TMEFF1
Gene ID             : ENSG00000251349.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSANTD3-TMEFF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSANTD3-TMEFF1ENSG00000251349.30.370.590.48ENCSR000AEF
HepG2MSANTD3-TMEFF1ENSG00000251349.33.124.363.74ENCSR985KAT
K562MSANTD3-TMEFF1ENSG00000251349.30.960.920.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSANTD3-TMEFF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSANTD3-TMEFF1 RNA is bound by 4 proteins.  







eCLIP assay for MSANTD3-TMEFF1 is not avaliable on ENCORE database.





4 proteins are bound to MSANTD3-TMEFF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9103212886103212992+3'-UTR,CDS,intron-Distal3.719596.76362K562YBX3
chr9103213189103213254+3'-UTR,CDS,intron-Distal4.181614.95438K562YBX3
chr9103212895103212943+3'-UTR,CDS,intron-Distal4.140616.37184K562RBM15
chr9103213231103213328+3'-UTR,CDS,intron-Distal5.0723017.98612K562PUM2
chr9103204638103204700+intron-Proximal3.842334.52312K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSANTD3-TMEFF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSANTD3-TMEFF1 is not available on ENCORE database.

  • 11 RBPs can affect the levels of MSANTD3-TMEFF1.  








The Knockdown/knockout RNA-Seq assay for MSANTD3-TMEFF1 is not available on ENCORE database.





11 RBPs can affect the gene expression of MSANTD3-TMEFF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSANTD3-TMEFF1ENSG00000251349.30.00000151.12160-99999.999998.129104.67860HepG2HNRNPUL1
MSANTD3-TMEFF1ENSG00000251349.30.00000174.46620-99999.999998.433604.77210HepG2NPM1
MSANTD3-TMEFF1ENSG00000251349.30.00000164.73850-99999.999998.341305.09250HepG2NUFIP2
MSANTD3-TMEFF1ENSG00000251349.30.00000156.07050-99999.999998.293604.19080HepG2RBFOX2
MSANTD3-TMEFF1ENSG00000251349.30.00000165.79490-99999.999998.360805.17630HepG2RBM17
MSANTD3-TMEFF1ENSG00000251349.30.00000145.93610-99999.999997.714604.85620HepG2RBM39
MSANTD3-TMEFF1ENSG00000251349.30.00000160.45930-99999.999998.134405.60900HepG2SF1
MSANTD3-TMEFF1ENSG00000251349.30.00000155.32620-99999.999998.261205.57400HepG2SFPQ
MSANTD3-TMEFF1ENSG00000251349.30.00000142.98350-99999.999997.895605.45520HepG2SNRNP200
MSANTD3-TMEFF1ENSG00000251349.30.00000166.88130-99999.999998.114306.33850HepG2U2AF2
MSANTD3-TMEFF1ENSG00000251349.39.513000.0000099999.999902.845601.32800K562ILF3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSANTD3-TMEFF1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of MSANTD3-TMEFF1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for MSANTD3-TMEFF1 is not avaliable on ENCORE database.