CTB-180A7.6

General Information

Gene Name       : CTB-180A7.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTB-180A7.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTB-180A7.6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTB-180A7.6 RNA is bound by 9 proteins.  







eCLIP assay for CTB-180A7.6 is not avaliable on ENCORE database.





9 proteins are bound to CTB-180A7.6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1963894936389614-CDS,intron-Distal5.3602211.88998K562LIN28B
chr1963896346389640-CDS,intron-Distal4.8789523.05167K562YBX3
chr1963874686387572-CDS,intron-Distal,intron-Proximal3.021613.85861K562PUM1
chr1963875296387571-CDS,intron-Distal,intron-Proximal3.688083.01531K562YBX3
chr1963896406389648-CDS,intron-Distal4.9463724.36083K562YBX3
chr1963874976387553-CDS,intron-Distal,intron-Proximal3.396654.44254K562GRWD1
chr1963874146387466-CDS,intron-Distal,intron-Proximal3.173503.18634K562MTPAP
chr1963868226386941-intron-Distal4.048623.31709K562ILF3
chr1963894626389622-CDS,intron-Distal4.444767.91821HepG2GRWD1
chr1963896216389649-CDS,intron-Distal,intron-Proximal4.244755.63221K562METAP2
chr1963874066387475-CDS,intron-Distal,intron-Proximal3.681256.38655K562GRWD1
chr1963894566389561-CDS,intron-Distal3.5460310.89980K562ZNF622
chr1963874536387571-CDS,intron-Distal,intron-Proximal3.422317.25129K562UCHL5
chr1963874756387567-CDS,intron-Distal,intron-Proximal3.748335.31167HepG2GRWD1
chr1963894566389637-CDS,intron-Distal3.4942215.62797K562UCHL5
chr1963896226389634-CDS,intron-Distal4.5287717.32535K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTB-180A7.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTB-180A7.6 is not available on ENCORE database.

  • 1 RBPs can affect the levels of CTB-180A7.6.  








The Knockdown/knockout RNA-Seq assay for CTB-180A7.6 is not available on ENCORE database.





1 RBPs can affect the gene expression of CTB-180A7.6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTB-180A7.6ENSG00000269444.140.695501.185005.101808.793007.84250K562AQR
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTB-180A7.6 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTB-180A7.6 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTB-180A7.6 is not avaliable on ENCORE database.