CKLF-CMTM1

General Information

Gene Name       : CKLF-CMTM1
Gene ID             : ENSG00000254788.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CKLF-CMTM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CKLF-CMTM1ENSG00000254788.70.000.360.18ENCSR000AEF
HepG2CKLF-CMTM1ENSG00000254788.71.320.510.92ENCSR985KAT
K562CKLF-CMTM1ENSG00000254788.71.161.061.11ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CKLF-CMTM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CKLF-CMTM1 RNA is bound by 6 proteins.  







eCLIP assay for CKLF-CMTM1 is not avaliable on ENCORE database.





6 proteins are bound to CKLF-CMTM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166658649966586687+5'-UTR,CDS4.7998737.26274K562DDX3X
chr166658653266586650+5'-UTR,CDS3.187008.76150HepG2LARP4
chr166658650066586573+5'-UTR4.7814729.90724HepG2DDX3X
chr166658653266586632+5'-UTR,CDS3.9405812.06609HepG2NCBP2
chr166658652966586652+5'-UTR,CDS3.476948.36924K562FTO
chr166658657366586633+5'-UTR,CDS4.8181821.60578HepG2DDX3X
chr166659219566592248+CDS,intron-Distal4.172893.66655K562YBX3
chr166659215166592195+CDS,intron-Distal3.849043.02250K562YBX3
chr166659838466598442+intron-Distal3.831667.38558HepG2HNRNPC
chr166659978966599885+CDS,intron-Distal3.260788.24214HepG2LARP4
chr166659978866599896+CDS,intron-Distal,intron-Proximal4.298363.67607K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CKLF-CMTM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CKLF-CMTM1 is not available on ENCORE database.

  • 3 RBPs can affect the levels of CKLF-CMTM1.  








The Knockdown/knockout RNA-Seq assay for CKLF-CMTM1 is not available on ENCORE database.





3 RBPs can affect the gene expression of CKLF-CMTM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CKLF-CMTM1ENSG00000254788.228.042207.574301.888302.488001.90060HepG2DDX6
CKLF-CMTM1ENSG00000254788.230.303904.548502.735904.583403.68630K562EIF2S2
CKLF-CMTM1ENSG00000254788.217.411702.477102.813202.413001.74480K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CKLF-CMTM1 is not available on ENCORE database.





3 RBPs can affect the splicing of CKLF-CMTM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECKLF-CMTM1ENSG00000254788.2chr16+66592092665922516659702466597120665865516658669666599985666003310.105000.000350.076631includedHepG2SLTM
MXECKLF-CMTM1ENSG00000254788.2chr16+66592092665922516659702466597120665865516658669666599985666003310.131000.000350.011301includedHepG2DDX55
MXECKLF-CMTM1ENSG00000254788.2chr16+66592092665922516659702466597120665865516658669666599985666003310.165000.000510.042691includedK562RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CKLF-CMTM1 is not avaliable on ENCORE database.