AC003002.6

General Information

Gene Name       : AC003002.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AC003002.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AC003002.6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AC003002.6 RNA is bound by 6 proteins.  







eCLIP assay for AC003002.6 is not avaliable on ENCORE database.





6 proteins are bound to AC003002.6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195790147957901524+5'-UTR,CDS,intron-Distal,intron-Proximal5.670378.52745HepG2AQR
chr195790148057901494+5'-UTR,CDS,intron-Distal,intron-Proximal5.370319.94888HepG2PRPF8
chr195790147957901527+5'-UTR,CDS,intron-Distal,intron-Proximal4.388896.99120K562AQR
chr195791487157915019+intron-Distal4.425503.84248K562LSM11
chr195790203857902109+5'-UTR,CDS,intron-Distal,intron-Proximal4.027315.63763K562AQR
chr195790407757904215+5'-UTR,CDS,intron-Distal,intron-Proximal3.989436.41317HepG2QKI
chr195790416757904340+5'-UTR,CDS,intron-Distal,intron-Proximal3.159223.47879HepG2PPIG
chr195790513157905304+intron-Distal3.666843.26999K562KHSRP
chr195790149457901532+intron-Distal,intron-Proximal4.7766411.25775HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AC003002.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AC003002.6 is not available on ENCORE database.

  • No RBPs affect the gene expression of AC003002.6 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for AC003002.6 is not available on ENCORE database.






No RBPs affect the gene expression of AC003002.6 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for AC003002.6 is not available on ENCORE database.





6 RBPs can affect the splicing of AC003002.6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAC003002.6ENSG00000269533.1chr19+5790416857904316579012515790148257905555579055910.491000.000120.02215includedHepG2HNRNPM
SEAC003002.6ENSG00000269533.1chr19+579020895790221357901251579014825790555557905591-0.528000.001820.08128excludedHepG2PTBP1
SEAC003002.6ENSG00000269533.1chr19+5790415557904316579020895790221357905555579055910.592000.000860.09804includedK562HNRNPM
SEAC003002.6ENSG00000269533.1chr19+579020895790221357901251579014825790555557905591-0.644000.000000.00010excludedHepG2SRSF1
SEAC003002.6ENSG00000269533.1chr19+579020895790221357901251579014825790555557905591-0.446000.000020.00137excludedHepG2SF3A3
SEAC003002.6ENSG00000269533.1chr19+579020895790221357901251579014825790555557905591-0.346000.000700.07403excludedHepG2SSB
SEAC003002.6ENSG00000269533.1chr19+579041685790431657901251579014825790555557905591-0.573000.000430.08558excludedHepG2FUS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AC003002.6 is not avaliable on ENCORE database.