VRK3

General Information

Gene Name : VRK3
Gene ID : ENSG00000105053.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VRK3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VRK3	ENSG00000105053.10	38.82	42.15	40.48	ENCSR000AEF
HepG2	VRK3	ENSG00000105053.10	19.72	27.09	23.41	ENCSR985KAT
K562	VRK3	ENSG00000105053.10	57.39	63.45	60.42	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VRK3 is not avaliable on ENCORE database.

Proteins bound to RNA

VRK3 RNA is bound by 7 proteins.

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eCLIP assay for VRK3 is not avaliable on ENCORE database.

7 proteins are bound to VRK3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	50484992	50485056	-	3'-UTR,intron-Distal	5.29095	19.16083	K562	EIF4G2
chr19	50492809	50492883	-	intron-Distal,intron-Proximal	6.45866	18.17544	K562	AQR
chr19	50492883	50492897	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.98985	12.46873	K562	AQR
chr19	50498489	50498521	-	3'-UTR,CDS,intron-Distal	3.83166	10.52461	K562	YBX3
chr19	50492826	50492914	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.48755	8.96422	HepG2	PRPF8
chr19	50523841	50523892	-	5'-UTR,intron-Distal,intron-Proximal	3.54357	8.00668	K562	YBX3
chr19	50498521	50498532	-	3'-UTR,CDS,intron-Distal	3.38406	7.38488	K562	YBX3
chr19	50510815	50511026	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.59311	6.39464	HepG2	BCLAF1
chr19	50484973	50485077	-	3'-UTR,intron-Distal	4.49711	5.44904	K562	TARDBP
chr19	50510777	50510850	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.84741	5.01842	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 18 entries

eCLIP assay for VRK3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VRK3 is not available on ENCORE database.
36 RBPs can affect the levels of VRK3.

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The Knockdown/knockout RNA-Seq assay for VRK3 is not available on ENCORE database.

36 RBPs can affect the gene expression of VRK3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VRK3	ENSG00000105053.6	1034.13180	504.90040	1.03420	28.60740	27.32180	HepG2	ZNF622
VRK3	ENSG00000105053.6	784.98240	380.15100	1.04600	14.21270	13.00480	HepG2	BOP1
VRK3	ENSG00000105053.6	354.69170	651.96770	-0.87820	11.35110	9.71060	K562	U2AF2
VRK3	ENSG00000105053.6	791.04850	1253.61820	-0.66430	11.04770	9.29240	K562	HNRNPU
VRK3	ENSG00000105053.6	411.65060	755.18540	-0.87540	9.38740	8.00200	K562	PRPF8
VRK3	ENSG00000105053.6	407.66420	653.25420	-0.68030	7.61610	6.35430	HepG2	EIF4G1
VRK3	ENSG00000105053.6	487.59390	776.04550	-0.67050	6.54060	5.09090	K562	EFTUD2
VRK3	ENSG00000105053.6	810.92600	508.05070	0.67450	6.09120	4.97360	HepG2	CIRBP
VRK3	ENSG00000105053.6	318.69920	483.48060	-0.60130	5.75400	4.68410	HepG2	AKAP8L
VRK3	ENSG00000105053.6	1017.89170	646.28190	0.65520	5.17200	4.47360	HepG2	AKAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 39 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VRK3 is not available on ENCORE database.

18 RBPs can affect the splicing of VRK3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VRK3	ENSG00000105053.6	chr19	-	50512492	50512642			50510825	50511083	50519280	50519420	-0.21800	0.00000	0.00019	excluded	K562	PRPF8
SE	VRK3	ENSG00000105053.6	chr19	-	50500760	50500827			50498447	50498532	50504046	50504111	-0.29000	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	VRK3	ENSG00000105053.6	chr19	-	50519388	50519461			50519388	50519420	50523841	50523904	0.06900	0.00000	0.00000	longer	K562	AQR
MXE	VRK3	ENSG00000105053.6	chr19	-	50498070	50498176	50498447	50498532	50496116	50496209	50504046	50504111	0.40100	0.00000	0.00000	1included	K562	HNRNPC
SE	VRK3	ENSG00000105053.6	chr19	-	50512492	50512642			50510825	50511083	50519280	50519420	-0.19600	0.00001	0.00090	excluded	K562	EFTUD2
SE	VRK3	ENSG00000105053.6	chr19	-	50512492	50512642			50510825	50511083	50519280	50519420	-0.16600	0.00002	0.00166	excluded	K562	PTBP1
A3SS	VRK3	ENSG00000105053.6	chr19	-	50496116	50496264			50496116	50496209	50498070	50498176	0.06500	0.00005	0.00043	longer	K562	AQR
SE	VRK3	ENSG00000105053.6	chr19	-	50512492	50512642			50510825	50511083	50519280	50519420	-0.11800	0.00007	0.01623	excluded	K562	SRSF7
SE	VRK3	ENSG00000105053.6	chr19	-	50500760	50500827			50498447	50498532	50504046	50504111	-0.16000	0.00009	0.00156	excluded	K562	AQR
MXE	VRK3	ENSG00000105053.6	chr19	-	50498447	50498532	50500760	50500827	50498070	50498176	50504046	50504111	0.24000	0.00010	0.00752	1included	K562	SBDS

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VRK3

General Information

Functions

Localization

Domains (AlphaFold: VRK3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VRK3 is not avaliable on ENCORE database.

7 proteins are bound to VRK3 RNA:

eCLIP assay for VRK3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VRK3 is not available on ENCORE database.

36 RBPs can affect the gene expression of VRK3 :

The Knockdown/knockout RNA-Seq assay for VRK3 is not available on ENCORE database.

18 RBPs can affect the splicing of VRK3 :

The Knockdown/knockout RNA-Seq assay for VRK3 is not avaliable on ENCORE database.