TMX2-CTNND1

General Information

Gene Name : TMX2-CTNND1
Gene ID : ENSG00000254462.1
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMX2-CTNND1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMX2-CTNND1	ENSG00000254462.1	0.00	0.35	0.17	ENCSR000AEF
HepG2	TMX2-CTNND1	ENSG00000254462.1	0.56	0.00	0.28	ENCSR985KAT
K562	TMX2-CTNND1	ENSG00000254462.1	0.11	0.23	0.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.

Proteins bound to RNA

TMX2-CTNND1 RNA is bound by 48 proteins.

CanvasJS.com

eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.

48 proteins are bound to TMX2-CTNND1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	57509688	57509709	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	6.46423	400.00000	K562	PABPC4
chr11	57509716	57509720	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	6.90786	400.00000	K562	PABPC4
chr11	57510334	57510373	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	6.82384	400.00000	K562	PABPC4
chr11	57546195	57546251	+	intron-Distal	5.61300	46.85611	HepG2	HNRNPM
chr11	57540323	57540406	+	intron-Distal	5.80742	40.90023	K562	PTBP1
chr11	57558905	57558991	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.30662	40.35734	HepG2	U2AF2
chr11	57509666	57509720	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.89740	39.22590	K562	DDX6
chr11	57558820	57558905	+	3'-UTR,intron-Distal,intron-Proximal	3.82334	38.92409	HepG2	U2AF2
chr11	57540321	57540378	+	intron-Distal	4.20476	37.74280	HepG2	PTBP1
chr11	57507801	57507852	+	3'-UTR,intron-Distal	4.35648	35.38651	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 159 entries

eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for TMX2-CTNND1 is not available on ENCORE database.
No RBPs affect the gene expression of TMX2-CTNND1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.

No RBPs affect the gene expression of TMX2-CTNND1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.

2 RBPs can affect the splicing of TMX2-CTNND1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TMX2-CTNND1	ENSG00000254462.1	chr11	+	57505384	57505498	57505825	57505902	57505079	57505140	57506135	57506242	0.12600	0.00030	0.01651	1included	K562	LIN28B
MXE	TMX2-CTNND1	ENSG00000254462.1	chr11	+	57505012	57505140	57556508	57556627	57480076	57480279	57558856	57559058	0.15700	0.00181	0.01526	1included	K562	AQR
MXE	TMX2-CTNND1	ENSG00000254462.1	chr11	+	57505030	57505140	57556508	57556627	57480076	57480279	57558856	57559058	0.12900	0.00622	0.04320	1included	K562	AQR

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMX2-CTNND1

General Information

Functions

Localization

Domains (AlphaFold: TMX2-CTNND1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.

48 proteins are bound to TMX2-CTNND1 RNA:

eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.

No RBPs affect the gene expression of TMX2-CTNND1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.

2 RBPs can affect the splicing of TMX2-CTNND1 :

The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not avaliable on ENCORE database.