SP140

General Information

Gene Name : SP140
Gene ID : ENSG00000079263.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SP140)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SP140	ENSG00000079263.18	90.43	81.77	86.10	ENCSR000AEF
HepG2	SP140	ENSG00000079263.18	0.37	0.55	0.46	ENCSR985KAT
K562	SP140	ENSG00000079263.18	0.00	0.33	0.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SP140 is not avaliable on ENCORE database.

Proteins bound to RNA

SP140 RNA is bound by 5 proteins.

CanvasJS.com

eCLIP assay for SP140 is not avaliable on ENCORE database.

5 proteins are bound to SP140 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	231094426	231094441	+	intron-Distal	7.10469	25.15291	K562	LSM11
chr2	231094441	231094450	+	intron-Distal	7.10469	25.15291	K562	LSM11
chr2	231211916	231211973	+	intron-Distal	4.95138	6.35761	K562	HNRNPM
chr2	231194995	231195085	+	intron-Distal	3.35487	6.28047	HepG2	SUGP2
chr2	231211842	231211903	+	intron-Distal	4.44118	5.16513	HepG2	HNRNPM
chr2	231198713	231198778	+	intron-Distal	4.29625	4.78128	HepG2	SUGP2
chr2	231223671	231223748	+	3'-UTR,CDS,intron-Proximal	3.29636	4.74755	K562	ZNF622
chr2	231211920	231211964	+	intron-Distal	4.20480	4.31871	HepG2	HNRNPM
chr2	231196012	231196096	+	intron-Distal	3.92021	3.79098	HepG2	SUGP2
chr2	231196668	231196720	+	intron-Distal	3.95721	3.63454	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 11 entries

eCLIP assay for SP140 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SP140 is not available on ENCORE database.
56 RBPs can affect the levels of SP140.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SP140 is not available on ENCORE database.

56 RBPs can affect the gene expression of SP140 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SP140	ENSG00000079263.14	285.08460	41.56330	2.77790	37.09370	35.27260	HepG2	SUCLG1
SP140	ENSG00000079263.14	264.97280	47.97630	2.46530	29.14610	27.96740	HepG2	SRFBP1
SP140	ENSG00000079263.14	286.63780	19.18820	3.90080	19.92930	17.93340	HepG2	CNOT7
SP140	ENSG00000079263.14	980.52450	42.47800	4.52870	15.33910	14.32000	HepG2	RBM22
SP140	ENSG00000079263.14	129.78370	15.75400	3.04220	14.50190	13.38300	HepG2	AKAP1
SP140	ENSG00000079263.14	109.73420	20.68880	2.40700	13.52080	12.39150	HepG2	ACO1
SP140	ENSG00000079263.14	102.32290	13.03590	2.97250	13.65460	12.03460	HepG2	ASCC1
SP140	ENSG00000079263.14	128.78260	21.14030	2.60680	11.41690	10.05730	HepG2	RAVER1
SP140	ENSG00000079263.14	90.22590	11.28590	2.99890	10.14980	9.22990	HepG2	PTBP1
SP140	ENSG00000079263.14	149.17490	31.65160	2.23660	10.11090	8.74580	HepG2	DDX55
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SP140 is not available on ENCORE database.

1 RBPs can affect the splicing of SP140 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	SP140	ENSG00000079263.14	chr2	+	231099652	231099790			231095125	231095243	231101797	231101975	0.72900	0.00128	0.07250	included	HepG2	RBM22

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SP140

General Information

Functions

Localization

Domains (AlphaFold: SP140)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SP140 is not avaliable on ENCORE database.

5 proteins are bound to SP140 RNA:

eCLIP assay for SP140 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SP140 is not available on ENCORE database.

56 RBPs can affect the gene expression of SP140 :

The Knockdown/knockout RNA-Seq assay for SP140 is not available on ENCORE database.

1 RBPs can affect the splicing of SP140 :

The Knockdown/knockout RNA-Seq assay for SP140 is not avaliable on ENCORE database.