RRAGB

General Information

Gene Name : RRAGB
Gene ID : ENSG00000083750.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RRAGB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RRAGB	ENSG00000083750.12	12.74	9.97	11.36	ENCSR000AEF
HepG2	RRAGB	ENSG00000083750.12	9.51	8.19	8.85	ENCSR985KAT
K562	RRAGB	ENSG00000083750.12	5.42	4.25	4.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RRAGB is not avaliable on ENCORE database.

Proteins bound to RNA

RRAGB RNA is bound by 10 proteins.

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eCLIP assay for RRAGB is not avaliable on ENCORE database.

10 proteins are bound to RRAGB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	55748592	55748658	+	CDS,intron-Proximal	4.30357	11.12444	HepG2	U2AF2
chrX	55748545	55748640	+	CDS,intron-Proximal	5.48141	7.91936	K562	SF3B4
chrX	55779926	55780014	+	CDS,intron-Proximal	4.94907	6.15361	K562	PRPF8
chrX	55757833	55757941	+	CDS	3.76347	6.02304	HepG2	GRWD1
chrX	55757859	55757968	+	CDS	3.30535	5.40132	HepG2	BCLAF1
chrX	55744762	55744849	+	CDS,intron-Distal	4.24128	4.94878	HepG2	GRWD1
chrX	55784792	55784931	+	3'-UTR	4.39165	4.80438	HepG2	KHSRP
chrX	55779925	55780007	+	CDS,intron-Proximal	5.55732	4.35676	HepG2	PRPF8
chrX	55744784	55744851	+	CDS,intron-Distal	3.25939	4.26492	HepG2	BCLAF1
chrX	55748596	55748657	+	CDS,intron-Proximal	4.16854	3.84661	K562	U2AF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for RRAGB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RRAGB is not available on ENCORE database.
46 RBPs can affect the levels of RRAGB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.

46 RBPs can affect the gene expression of RRAGB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RRAGB	ENSG00000083750.8	556.91060	214.38890	1.37710	22.07790	20.89730	HepG2	RBM22
RRAGB	ENSG00000083750.8	84.61030	231.78590	-1.45390	9.31840	8.25700	HepG2	DDX6
RRAGB	ENSG00000083750.8	399.41780	228.41660	0.80610	6.91010	6.24510	HepG2	SRSF1
RRAGB	ENSG00000083750.8	187.47290	85.90730	1.12570	6.44810	5.38010	K562	SRSF1
RRAGB	ENSG00000083750.8	242.91810	130.35190	0.89800	6.26720	5.15460	HepG2	PRPF4
RRAGB	ENSG00000083750.8	159.44760	68.03700	1.22860	5.96130	5.11830	K562	HNRNPC
RRAGB	ENSG00000083750.8	223.20030	97.71580	1.19160	6.00760	4.74120	HepG2	BCLAF1
RRAGB	ENSG00000083750.8	288.75970	157.14570	0.87770	5.36400	4.59310	K562	AQR
RRAGB	ENSG00000083750.8	332.81730	210.24890	0.66250	5.20570	4.54570	HepG2	SSB
RRAGB	ENSG00000083750.8	238.09290	124.29000	0.93770	5.18760	4.34150	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 56 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.

12 RBPs can affect the splicing of RRAGB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RRAGB	ENSG00000083750.8	chrX	+	55778673	55778786	55777533	55777629	55779824	55779947	0.42000	0.00003	0.00503	included	HepG2	G3BP1
SE	RRAGB	ENSG00000083750.8	chrX	+	55781500	55781639	55779824	55779947	55782273	55782365	0.54000	0.00009	0.01063	included	HepG2	HNRNPL
SE	RRAGB	ENSG00000083750.8	chrX	+	55781500	55781639	55779824	55779947	55782273	55782365	0.48700	0.00013	0.03059	included	HepG2	RBM15
SE	RRAGB	ENSG00000083750.8	chrX	+	55778673	55778834	55777533	55777629	55779824	55779947	-0.50000	0.00018	0.02807	excluded	HepG2	SSB
SE	RRAGB	ENSG00000083750.8	chrX	+	55778678	55778834	55777533	55777629	55779824	55779947	0.54300	0.00028	0.02422	included	HepG2	HNRNPL
SE	RRAGB	ENSG00000083750.8	chrX	+	55778673	55778834	55777533	55777629	55779824	55779947	0.65500	0.00046	0.09237	included	HepG2	EIF3D
SE	RRAGB	ENSG00000083750.8	chrX	+	55781500	55781639	55779824	55779947	55782273	55782365	-0.30000	0.00066	0.07141	excluded	HepG2	SSB
SE	RRAGB	ENSG00000083750.8	chrX	+	55781500	55781639	55779824	55779947	55782273	55782365	0.45700	0.00093	0.07647	included	HepG2	PRPF8
SE	RRAGB	ENSG00000083750.8	chrX	+	55778678	55778786	55777533	55777629	55779824	55779947	0.38000	0.00094	0.08380	included	HepG2	TAF15
SE	RRAGB	ENSG00000083750.8	chrX	+	55778673	55778834	55777533	55777629	55779824	55779947	0.64600	0.00098	0.06674	included	HepG2	TIAL1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RRAGB

General Information

Functions

Localization

Domains (AlphaFold: RRAGB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RRAGB is not avaliable on ENCORE database.

10 proteins are bound to RRAGB RNA:

eCLIP assay for RRAGB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.

46 RBPs can affect the gene expression of RRAGB :

The Knockdown/knockout RNA-Seq assay for RRAGB is not available on ENCORE database.

12 RBPs can affect the splicing of RRAGB :

The Knockdown/knockout RNA-Seq assay for RRAGB is not avaliable on ENCORE database.