C5orf22

General Information

Gene Name : C5orf22
Gene ID : ENSG00000082213.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C5orf22)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C5orf22	ENSG00000082213.17	22.66	20.85	21.76	ENCSR000AEF
HepG2	C5orf22	ENSG00000082213.17	8.98	16.65	12.81	ENCSR985KAT
K562	C5orf22	ENSG00000082213.17	27.79	33.43	30.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C5orf22 is not avaliable on ENCORE database.

Proteins bound to RNA

C5orf22 RNA is bound by 7 proteins.

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eCLIP assay for C5orf22 is not avaliable on ENCORE database.

7 proteins are bound to C5orf22 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	31553065	31553112	+	3'-UTR	4.33851	7.87748	K562	PUM2
chr5	31532419	31532575	+	5'-UTR,CDS	3.91041	6.97927	K562	DDX3X
chr5	31553927	31553990	+	3'-UTR	3.10046	4.14964	K562	UPF1
chr5	31552866	31552915	+	3'-UTR,CDS,intron-Proximal	4.36762	3.77802	HepG2	U2AF2
chr5	31541250	31541386	+	intron-Distal,intron-Proximal	3.89656	3.45805	K562	KHSRP
chr5	31552941	31553044	+	3'-UTR,CDS	3.77304	3.43253	K562	YBX3
chr5	31554120	31554138	+	3'-UTR	4.16361	3.11728	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 7 of 7 entries

eCLIP assay for C5orf22 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C5orf22 is not available on ENCORE database.
52 RBPs can affect the levels of C5orf22.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C5orf22 is not available on ENCORE database.

52 RBPs can affect the gene expression of C5orf22 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C5orf22	ENSG00000082213.13	1288.63970	574.07540	1.16640	22.65940	21.17230	HepG2	PUF60
C5orf22	ENSG00000082213.13	348.86930	817.55730	-1.22860	17.99960	16.36730	HepG2	SF3B1
C5orf22	ENSG00000082213.13	295.49350	557.21870	-0.91510	13.28270	12.17870	HepG2	TRIM56
C5orf22	ENSG00000082213.13	1443.99190	834.95210	0.79020	11.60510	9.88850	K562	EIF4A3
C5orf22	ENSG00000082213.13	1502.85520	952.38890	0.65800	10.64890	9.06850	K562	U2AF2
C5orf22	ENSG00000082213.13	1335.99980	722.54850	0.88670	9.52620	8.60400	HepG2	AKAP1
C5orf22	ENSG00000082213.13	1143.61950	637.49700	0.84300	9.72360	8.51180	HepG2	MAGOH
C5orf22	ENSG00000082213.13	1111.35640	489.90580	1.18160	9.74440	8.47420	HepG2	RAVER1
C5orf22	ENSG00000082213.13	300.29670	591.22070	-0.97730	9.23920	8.05980	HepG2	G3BP1
C5orf22	ENSG00000082213.13	1770.34730	1158.51250	0.61170	8.74660	7.20710	K562	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C5orf22 is not available on ENCORE database.

6 RBPs can affect the splicing of C5orf22 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C5orf22	ENSG00000082213.13	chr5	+	31548596	31548794	31545777	31545819	31551399	31551539	0.12800	0.00008	0.00270	included	K562	SRSF1
A3SS	C5orf22	ENSG00000082213.13	chr5	+	31551372	31551539	31551399	31551539	31545706	31545819	0.10300	0.00009	0.00076	longer	K562	AQR
A3SS	C5orf22	ENSG00000082213.13	chr5	+	31538366	31538796	31538590	31538796	31535850	31536000	-0.30700	0.00014	0.08645	shorter	K562	FMR1
SE	C5orf22	ENSG00000082213.13	chr5	+	31548596	31548794	31545777	31545819	31551399	31551539	-0.16900	0.00082	0.05016	excluded	HepG2	AKAP1
SE	C5orf22	ENSG00000082213.13	chr5	+	31548596	31548794	31545777	31545819	31551399	31551539	-0.26400	0.00262	0.03146	excluded	HepG2	U2AF2
SE	C5orf22	ENSG00000082213.13	chr5	+	31548596	31548794	31545777	31545819	31551399	31551539	0.23700	0.00392	0.08793	included	HepG2	SF3A3
SE	C5orf22	ENSG00000082213.13	chr5	+	31545752	31545819	31541387	31541509	31551399	31551539	-0.07300	0.00481	0.04503	excluded	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C5orf22

General Information

Functions

Localization

Domains (AlphaFold: C5orf22)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C5orf22 is not avaliable on ENCORE database.

7 proteins are bound to C5orf22 RNA:

eCLIP assay for C5orf22 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C5orf22 is not available on ENCORE database.

52 RBPs can affect the gene expression of C5orf22 :

The Knockdown/knockout RNA-Seq assay for C5orf22 is not available on ENCORE database.

6 RBPs can affect the splicing of C5orf22 :

The Knockdown/knockout RNA-Seq assay for C5orf22 is not avaliable on ENCORE database.