ZNF420

General Information

Gene Name : ZNF420
Gene ID : ENSG00000197050.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZNF420)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNF420	ENSG00000197050.10	3.10	3.25	3.17	ENCSR000AEF
HepG2	ZNF420	ENSG00000197050.10	2.96	3.84	3.40	ENCSR985KAT
K562	ZNF420	ENSG00000197050.10	3.90	3.40	3.65	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNF420 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNF420 RNA is bound by 22 proteins.

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eCLIP assay for ZNF420 is not avaliable on ENCORE database.

22 proteins are bound to ZNF420 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	37503194	37503196	+	intron-Distal	9.35918	174.68943	HepG2	SF3A3
chr19	37503204	37503212	+	intron-Distal	9.35918	174.68943	HepG2	SF3A3
chr19	37503212	37503215	+	intron-Distal	9.35918	174.68943	HepG2	SF3A3
chr19	37503196	37503204	+	intron-Distal	9.35918	174.68943	HepG2	SF3A3
chr19	37546940	37546976	+	intron-Distal	4.73105	60.55188	K562	EIF4G2
chr19	37546928	37546993	+	intron-Distal	4.28701	45.07889	K562	TARDBP
chr19	37546976	37546991	+	intron-Distal	4.41011	35.12400	K562	EIF4G2
chr19	37546928	37546975	+	intron-Distal	3.85594	33.46590	K562	EWSR1
chr19	37503199	37503210	+	intron-Distal	6.98136	26.75814	HepG2	SMNDC1
chr19	37503210	37503216	+	intron-Distal	6.98136	26.75814	HepG2	SMNDC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 62 entries

eCLIP assay for ZNF420 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNF420 is not available on ENCORE database.
40 RBPs can affect the levels of ZNF420.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.

40 RBPs can affect the gene expression of ZNF420 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNF420	ENSG00000197050.6	630.03330	302.45650	1.05860	11.25690	10.19130	K562	AQR
ZNF420	ENSG00000197050.6	290.03780	126.11600	1.20140	10.59830	9.72870	HepG2	RBM22
ZNF420	ENSG00000197050.6	268.58670	123.69490	1.11850	10.25320	9.38630	HepG2	SSB
ZNF420	ENSG00000197050.6	252.13320	150.88460	0.74060	4.86300	4.10580	HepG2	ETF1
ZNF420	ENSG00000197050.6	71.35030	156.52220	-1.13340	4.94950	4.03680	HepG2	HNRNPK
ZNF420	ENSG00000197050.6	126.09390	53.31920	1.24170	4.65990	3.85520	HepG2	U2AF1
ZNF420	ENSG00000197050.6	121.05040	52.96230	1.19250	4.65470	3.80000	HepG2	RPLP0
ZNF420	ENSG00000197050.6	97.13250	199.00510	-1.03480	4.55740	3.64440	K562	TARDBP
ZNF420	ENSG00000197050.6	106.89600	200.55540	-0.90780	4.20410	3.40200	K562	PTBP1
ZNF420	ENSG00000197050.6	76.84400	155.44660	-1.01640	4.02830	3.29420	HepG2	DDX6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.

1 RBPs can affect the splicing of ZNF420 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
MXE	ZNF420	ENSG00000197050.6	chr19	+	37571246	37571290	37618029	37618216	37569336	37569472	37621045	37621212	-0.33200	0.00281	0.02219	2included	K562	AQR

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNF420

General Information

Functions

Localization

Domains (AlphaFold: ZNF420)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNF420 is not avaliable on ENCORE database.

22 proteins are bound to ZNF420 RNA:

eCLIP assay for ZNF420 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.

40 RBPs can affect the gene expression of ZNF420 :

The Knockdown/knockout RNA-Seq assay for ZNF420 is not available on ENCORE database.

1 RBPs can affect the splicing of ZNF420 :

The Knockdown/knockout RNA-Seq assay for ZNF420 is not avaliable on ENCORE database.