ZNF397

General Information

Gene Name : ZNF397
Gene ID : ENSG00000186812.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZNF397)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNF397	ENSG00000186812.12	14.70	8.50	11.60	ENCSR000AEF
HepG2	ZNF397	ENSG00000186812.12	4.95	7.50	6.22	ENCSR985KAT
K562	ZNF397	ENSG00000186812.12	14.33	16.28	15.30	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNF397 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNF397 RNA is bound by 4 proteins.

CanvasJS.com

eCLIP assay for ZNF397 is not avaliable on ENCORE database.

4 proteins are bound to ZNF397 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	32826268	32826350	+	3'-UTR,CDS,intron-Distal	4.04843	8.27513	K562	PUM2
chr18	32822618	32822647	+	CDS,intron-Distal	3.59770	7.19516	K562	RBM15
chr18	32823263	32823315	+	CDS,intron-Proximal	4.69963	3.62536	K562	AQR
chr18	32826388	32826424	+	3'-UTR,intron-Distal	3.34921	3.42164	K562	UPF1
chr18	32826730	32826769	+	3'-UTR,intron-Distal	3.19013	3.06830	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 5 of 5 entries

eCLIP assay for ZNF397 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNF397 is not available on ENCORE database.
75 RBPs can affect the levels of ZNF397.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.

75 RBPs can affect the gene expression of ZNF397 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNF397	ENSG00000186812.8	385.51530	961.13370	-1.31790	21.60550	20.11410	K562	PUS1
ZNF397	ENSG00000186812.8	432.55680	183.95000	1.23350	15.96860	14.78620	HepG2	TAF15
ZNF397	ENSG00000186812.8	502.01140	936.47630	-0.89950	14.78600	13.39970	K562	RBM15
ZNF397	ENSG00000186812.8	460.47080	203.88130	1.17530	14.21720	12.95790	HepG2	QKI
ZNF397	ENSG00000186812.8	488.03430	879.22880	-0.84930	12.66630	11.29990	K562	PTBP1
ZNF397	ENSG00000186812.8	555.57300	931.38570	-0.74540	11.98270	10.89320	K562	AGGF1
ZNF397	ENSG00000186812.8	363.06650	638.32140	-0.81400	10.40350	8.85120	K562	EIF3G
ZNF397	ENSG00000186812.8	365.63580	188.29840	0.95730	9.66940	8.76860	HepG2	PTBP1
ZNF397	ENSG00000186812.8	430.65120	681.76390	-0.66280	8.08860	6.95710	K562	EIF2S2
ZNF397	ENSG00000186812.8	1068.85150	699.05090	0.61250	8.23500	6.83390	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.

7 RBPs can affect the splicing of ZNF397 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	ZNF397	ENSG00000186812.8	chr18	+	32823115	32823349	32823115	32823257	32825225	32825315	0.39600	0.00000	0.00142	longer	K562	HNRNPU
A5SS	ZNF397	ENSG00000186812.8	chr18	+	32823115	32823349	32823115	32823257	32825225	32825315	-0.08700	0.00006	0.03774	shorter	K562	LARP4
SE	ZNF397	ENSG00000186812.8	chr18	+	32821565	32821654	32821018	32821073	32822354	32822848	0.30600	0.00007	0.06162	included	K562	TRA2A
A5SS	ZNF397	ENSG00000186812.8	chr18	+	32823115	32823349	32823115	32823257	32825225	32825315	-0.20400	0.00019	0.07219	shorter	K562	TAF15
A5SS	ZNF397	ENSG00000186812.8	chr18	+	32823115	32823349	32823115	32823257	32825225	32825315	0.20600	0.00021	0.03303	longer	K562	PTBP1
SE	ZNF397	ENSG00000186812.8	chr18	+	32822354	32822848	32821000	32821073	32823115	32823349	-0.27200	0.00046	0.01100	excluded	K562	SRSF1
A5SS	ZNF397	ENSG00000186812.8	chr18	+	32823115	32823349	32823115	32823257	32825225	32827153	0.18300	0.00053	0.03374	longer	K562	SRSF1
SE	ZNF397	ENSG00000186812.8	chr18	+	32825225	32825315	32823115	32823257	32834195	32834366	-0.32500	0.00117	0.02389	excluded	K562	SRSF1
SE	ZNF397	ENSG00000186812.8	chr18	+	32821565	32821654	32821018	32821073	32822354	32822848	-0.20400	0.00562	0.07958	excluded	K562	U2AF2

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNF397

General Information

Functions

Localization

Domains (AlphaFold: ZNF397)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNF397 is not avaliable on ENCORE database.

4 proteins are bound to ZNF397 RNA:

eCLIP assay for ZNF397 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.

75 RBPs can affect the gene expression of ZNF397 :

The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.

7 RBPs can affect the splicing of ZNF397 :

The Knockdown/knockout RNA-Seq assay for ZNF397 is not avaliable on ENCORE database.