TBC1D23

General Information

Gene Name : TBC1D23
Gene ID : ENSG00000036054.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBC1D23)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBC1D23	ENSG00000036054.12	9.80	8.55	9.18	ENCSR000AEF
HepG2	TBC1D23	ENSG00000036054.12	8.68	17.38	13.03	ENCSR985KAT
K562	TBC1D23	ENSG00000036054.12	17.63	19.53	18.58	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBC1D23 is not avaliable on ENCORE database.

Proteins bound to RNA

TBC1D23 RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for TBC1D23 is not avaliable on ENCORE database.

20 proteins are bound to TBC1D23 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	100029246	100029401	+	CDS,intron-Proximal	4.03672	18.80104	HepG2	BCLAF1
chr3	99998492	99998604	+	5'-UTR,CDS,intron-Proximal	3.22298	13.95074	K562	UCHL5
chr3	100025272	100025330	+	CDS,intron-Proximal	4.48113	13.06670	K562	U2AF2
chr3	100025311	100025386	+	CDS	3.80927	13.02953	HepG2	BCLAF1
chr3	99979900	99979916	+	CDS,intron-Proximal	3.92063	11.39909	K562	ZNF622
chr3	99998514	99998602	+	5'-UTR,CDS	3.39830	10.67070	HepG2	BCLAF1
chr3	100034917	100034995	+	CDS,intron-Proximal	3.32020	10.43525	HepG2	U2AF2
chr3	99979855	99979900	+	5'-UTR,CDS	3.39011	10.35530	K562	ZNF622
chr3	100025289	100025384	+	CDS	3.00772	10.34472	K562	ZNF622
chr3	100015061	100015120	+	CDS,intron-Proximal	3.03675	9.69611	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 57 entries

eCLIP assay for TBC1D23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBC1D23 is not available on ENCORE database.
92 RBPs can affect the levels of TBC1D23.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBC1D23 is not available on ENCORE database.

92 RBPs can affect the gene expression of TBC1D23 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBC1D23	ENSG00000036054.8	1530.00390	2775.65030	-0.85930	19.58850	17.89290	K562	PTBP1
TBC1D23	ENSG00000036054.8	440.61540	916.82400	-1.05710	15.94360	14.59940	HepG2	HNRNPA1
TBC1D23	ENSG00000036054.8	2382.19020	1619.81460	0.55640	14.06380	13.16670	HepG2	SRFBP1
TBC1D23	ENSG00000036054.8	3593.41050	2268.19500	0.66370	13.60370	12.28240	K562	RBM15
TBC1D23	ENSG00000036054.8	679.18520	1034.81270	-0.60750	12.14480	10.73290	HepG2	ILF2
TBC1D23	ENSG00000036054.8	1435.79750	2208.80970	-0.62140	11.24760	10.11330	K562	FXR1
TBC1D23	ENSG00000036054.8	696.10440	1052.07270	-0.59590	11.22830	10.07060	HepG2	SMN1
TBC1D23	ENSG00000036054.8	1040.65320	1561.28010	-0.58520	10.82160	9.88240	HepG2	NELFE
TBC1D23	ENSG00000036054.8	374.44440	696.02070	-0.89440	10.98520	9.85840	HepG2	RPS19
TBC1D23	ENSG00000036054.8	2677.92500	3798.01070	-0.50410	11.01590	9.08960	K562	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBC1D23 is not available on ENCORE database.

39 RBPs can affect the splicing of TBC1D23 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.20800	0.00000	excluded	K562	SF3B4
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.35800	0.00000	excluded	HepG2	U2AF1
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	0.40100	0.00000	included	HepG2	HNRNPK
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.45000	0.00000	excluded	HepG2	U2AF2
SE	TBC1D23	ENSG00000036054.8	chr3	+	100013688	100013806	100009421	100009545	100013930	100014055	0.06600	0.00001	included	K562	AQR
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.26200	0.00000	excluded	K562	AQR
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.31400	0.00258	excluded	K562	KHDRBS1
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.14500	0.00000	excluded	K562	PUS1
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.15200	0.00023	excluded	K562	MTPAP
SE	TBC1D23	ENSG00000036054.8	chr3	+	100030676	100030721	100029246	100029386	100034942	100035031	-0.25100	0.00008	excluded	HepG2	NCBP2

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBC1D23

General Information

Functions

Localization

Domains (AlphaFold: TBC1D23)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBC1D23 is not avaliable on ENCORE database.

20 proteins are bound to TBC1D23 RNA:

eCLIP assay for TBC1D23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBC1D23 is not available on ENCORE database.

92 RBPs can affect the gene expression of TBC1D23 :

The Knockdown/knockout RNA-Seq assay for TBC1D23 is not available on ENCORE database.

39 RBPs can affect the splicing of TBC1D23 :

The Knockdown/knockout RNA-Seq assay for TBC1D23 is not avaliable on ENCORE database.