RANBP9

General Information

Gene Name : RANBP9
Gene ID : ENSG00000010017.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RANBP9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RANBP9	ENSG00000010017.12	27.90	29.36	28.63	ENCSR000AEF
HepG2	RANBP9	ENSG00000010017.12	26.37	33.95	30.16	ENCSR985KAT
K562	RANBP9	ENSG00000010017.12	89.64	87.24	88.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RANBP9 is not avaliable on ENCORE database.

Proteins bound to RNA

RANBP9 RNA is bound by 32 proteins.

CanvasJS.com

eCLIP assay for RANBP9 is not avaliable on ENCORE database.

32 proteins are bound to RANBP9 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	13659011	13659045	-	CDS,intron-Distal,intron-Proximal	6.26253	64.37862	K562	LIN28B
chr6	13657463	13657508	-	CDS,intron-Distal	5.51257	35.54987	K562	LIN28B
chr6	13659045	13659055	-	CDS,intron-Distal	5.14589	29.27085	K562	LIN28B
chr6	13680324	13680332	-	intron-Distal	6.40460	24.66178	K562	LSM11
chr6	13680332	13680366	-	intron-Distal	5.72882	24.35055	K562	LSM11
chr6	13638038	13638108	-	CDS,intron-Distal,intron-Proximal	6.64623	21.98431	K562	IGF2BP1
chr6	13665814	13665882	-	intron-Distal	4.40162	16.65266	K562	EXOSC5
chr6	13659199	13659281	-	intron-Distal	4.38078	16.03139	K562	KHSRP
chr6	13680296	13680324	-	intron-Distal	6.06211	13.93893	K562	LSM11
chr6	13657281	13657364	-	CDS,intron-Distal,intron-Proximal	4.92816	13.38808	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 125 entries

eCLIP assay for RANBP9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RANBP9 is not available on ENCORE database.
77 RBPs can affect the levels of RANBP9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RANBP9 is not available on ENCORE database.

77 RBPs can affect the gene expression of RANBP9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RANBP9	ENSG00000010017.9	1820.82480	3456.31610	-0.92460	22.63230	19.98640	K562	MATR3
RANBP9	ENSG00000010017.9	787.74330	1346.57630	-0.77350	20.99110	19.34890	HepG2	DNAJC2
RANBP9	ENSG00000010017.9	2766.48330	5131.89110	-0.89140	19.97850	17.54230	K562	ZC3H8
RANBP9	ENSG00000010017.9	9378.60910	5249.68560	0.83700	17.67100	16.33840	K562	PUS1
RANBP9	ENSG00000010017.9	1456.13590	2108.32050	-0.53390	14.61850	13.48010	HepG2	PUM1
RANBP9	ENSG00000010017.9	2246.70320	1540.90340	0.54390	13.40810	12.22730	HepG2	PUS1
RANBP9	ENSG00000010017.9	880.63090	1472.88530	-0.74200	13.15710	12.20510	HepG2	TIAL1
RANBP9	ENSG00000010017.9	966.16330	1908.37170	-0.98200	13.31990	12.00940	HepG2	MATR3
RANBP9	ENSG00000010017.9	1017.18500	1512.43820	-0.57230	12.89160	11.66880	HepG2	CKAP4
RANBP9	ENSG00000010017.9	985.53780	1880.14090	-0.93190	11.89850	10.59840	HepG2	EIF4A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RANBP9 is not available on ENCORE database.

6 RBPs can affect the splicing of RANBP9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RANBP9	ENSG00000010017.9	chr6	-	13634662	13634784			13632601	13632753	13638039	13638225	-0.10300	0.00000	excluded	K562	AQR
SE	RANBP9	ENSG00000010017.9	chr6	-	13642710	13642850			13641430	13641539	13644776	13644961	-0.08500	0.00003	excluded	K562	AQR
SE	RANBP9	ENSG00000010017.9	chr6	-	13652890	13652913			13644776	13644961	13657340	13657508	-0.07100	0.00000	excluded	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13639794	13640031			13639794	13639985	13641430	13641539	0.07500	0.00000	longer	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13632601	13632824			13632601	13632753	13634662	13634784	0.18600	0.00000	longer	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13641430	13641630			13641430	13641539	13642710	13642879	0.08400	0.00000	longer	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13638039	13638225			13638039	13638187	13639794	13640031	0.06100	0.00000	longer	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13642710	13642906			13642710	13642823	13644776	13644924	0.06300	0.00000	longer	K562	AQR
A3SS	RANBP9	ENSG00000010017.9	chr6	-	13634662	13634902			13634662	13634784	13638039	13638281	0.09100	0.00000	longer	K562	AQR
MXE	RANBP9	ENSG00000010017.9	chr6	-	13634662	13634784	13638039	13638225	13632601	13632753	13639794	13639985	0.14100	0.00000	1included	K562	AQR

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RANBP9

General Information

Functions

Localization

Domains (AlphaFold: RANBP9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RANBP9 is not avaliable on ENCORE database.

32 proteins are bound to RANBP9 RNA:

eCLIP assay for RANBP9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RANBP9 is not available on ENCORE database.

77 RBPs can affect the gene expression of RANBP9 :

The Knockdown/knockout RNA-Seq assay for RANBP9 is not available on ENCORE database.

6 RBPs can affect the splicing of RANBP9 :

The Knockdown/knockout RNA-Seq assay for RANBP9 is not avaliable on ENCORE database.