PRAME

General Information

Gene Name : PRAME
Gene ID : ENSG00000185686.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRAME)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRAME	ENSG00000185686.17	0.43	0.43	0.43	ENCSR000AEF
HepG2	PRAME	ENSG00000185686.17	0.25	0.32	0.29	ENCSR985KAT
K562	PRAME	ENSG00000185686.17	1109.43	1068.52	1088.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRAME is not avaliable on ENCORE database.

Proteins bound to RNA

PRAME RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for PRAME is not avaliable on ENCORE database.

36 proteins are bound to PRAME RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	22890270	22890311	-	3'-UTR,intron-Distal,intron-Proximal	3.20401	400.00000	K562	DDX6
chr22	22890311	22890386	-	3'-UTR,intron-Distal,intron-Proximal	3.09972	400.00000	K562	DDX6
chr22	22890149	22890236	-	3'-UTR,intron-Distal,intron-Proximal	3.00481	400.00000	K562	PABPC4
chr22	22899890	22899918	-	5'-UTR,intron-Distal,intron-Proximal	3.11638	400.00000	K562	PRPF8
chr22	22899333	22899347	-	5'-UTR,intron-Distal,intron-Proximal	5.75987	400.00000	K562	AQR
chr22	22899322	22899342	-	5'-UTR,intron-Distal,intron-Proximal	3.27343	400.00000	K562	PRPF8
chr22	22899907	22899912	-	5'-UTR,intron-Distal,intron-Proximal	6.29538	400.00000	K562	AQR
chr22	22899329	22899333	-	5'-UTR,intron-Distal,intron-Proximal	5.52887	400.00000	K562	AQR
chr22	22899844	22899868	-	5'-UTR,intron-Distal,intron-Proximal	5.05636	400.00000	K562	AQR
chr22	22899888	22899905	-	5'-UTR,intron-Distal,intron-Proximal	6.32242	400.00000	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 178 entries

eCLIP assay for PRAME is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRAME is not available on ENCORE database.
42 RBPs can affect the levels of PRAME.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRAME is not available on ENCORE database.

42 RBPs can affect the gene expression of PRAME :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRAME	ENSG00000185686.13	927.05310	12.79210	6.17920	93.73670	90.04710	HepG2	CNOT7
PRAME	ENSG00000185686.13	13593.64510	24139.42170	-0.82850	25.00210	22.12980	K562	RCC2
PRAME	ENSG00000185686.13	126.35500	23.40830	2.43230	12.08890	10.53950	HepG2	ASCC1
PRAME	ENSG00000185686.13	107.78340	23.14760	2.21910	10.31070	9.06860	HepG2	G3BP1
PRAME	ENSG00000185686.13	58.22620	5.82800	3.32050	9.64750	8.41190	HepG2	TARDBP
PRAME	ENSG00000185686.13	18120.22740	29810.09380	-0.71820	9.20520	7.17520	K562	EIF3D
PRAME	ENSG00000185686.13	23206.49000	32351.21520	-0.47930	6.75220	4.80640	K562	CIRBP
PRAME	ENSG00000185686.13	60.09790	11.84030	2.34350	6.45690	4.75790	HepG2	GRSF1
PRAME	ENSG00000185686.13	48.30700	10.32880	2.22550	5.46740	4.67260	HepG2	UTP3
PRAME	ENSG00000185686.13	82.74280	25.43530	1.70170	5.52580	4.59260	HepG2	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 45 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRAME is not available on ENCORE database.

34 RBPs can affect the splicing of PRAME :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	-0.12500	0.00000	excluded	K562	SF3B4
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	-0.06900	0.00000	excluded	K562	PRPF8
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	-0.18600	0.00000	excluded	K562	AKAP8L
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	-0.05600	0.00637	excluded	K562	LIN28B
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893188	22893511	22899964	22900012	-0.12400	0.00000	excluded	K562	AQR
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899506	22893175	22893511	22899964	22900000	-0.06600	0.00116	excluded	K562	SUPV3L1
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	-0.15200	0.00000	excluded	K562	PUS1
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900174	0.05300	0.00000	included	K562	U2AF1
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899350	22893273	22893511	22899964	22900000	-0.06100	0.00040	excluded	K562	HNRNPUL1
SE	PRAME	ENSG00000185686.13	chr22	-	22899231	22899506	22893175	22893511	22899964	22900000	0.05700	0.00708	included	K562	TBRG4

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRAME

General Information

Functions

Localization

Domains (AlphaFold: PRAME)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRAME is not avaliable on ENCORE database.

36 proteins are bound to PRAME RNA:

eCLIP assay for PRAME is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRAME is not available on ENCORE database.

42 RBPs can affect the gene expression of PRAME :

The Knockdown/knockout RNA-Seq assay for PRAME is not available on ENCORE database.

34 RBPs can affect the splicing of PRAME :

The Knockdown/knockout RNA-Seq assay for PRAME is not avaliable on ENCORE database.