PCMTD2

General Information

Gene Name : PCMTD2
Gene ID : ENSG00000203880.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PCMTD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PCMTD2	ENSG00000203880.11	20.62	18.30	19.46	ENCSR000AEF
HepG2	PCMTD2	ENSG00000203880.11	23.92	38.89	31.41	ENCSR985KAT
K562	PCMTD2	ENSG00000203880.11	18.02	23.48	20.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PCMTD2 is not avaliable on ENCORE database.

Proteins bound to RNA

PCMTD2 RNA is bound by 35 proteins.

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eCLIP assay for PCMTD2 is not avaliable on ENCORE database.

35 proteins are bound to PCMTD2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	62901212	62901314	+	intron-Distal	7.55442	39.51752	K562	EIF4G2
chr20	62901480	62901607	+	intron-Distal	6.42803	36.06256	K562	EIF4G2
chr20	62901877	62901978	+	intron-Distal	5.25297	29.76208	K562	EIF4G2
chr20	62901622	62901719	+	intron-Distal	5.18344	27.33073	K562	EIF4G2
chr20	62901721	62901794	+	intron-Distal	5.99325	27.11546	K562	EIF4G2
chr20	62901876	62901999	+	intron-Distal	5.13547	25.46967	K562	EXOSC5
chr20	62901184	62901347	+	intron-Distal	6.94993	23.54872	HepG2	DKC1
chr20	62901398	62901460	+	intron-Distal	6.74439	21.42306	K562	EIF4G2
chr20	62901314	62901370	+	intron-Distal	5.61302	20.58168	K562	EIF4G2
chr20	62891597	62891664	+	CDS,intron-Distal,intron-Proximal	4.07545	18.70141	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 151 entries

eCLIP assay for PCMTD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PCMTD2 is not available on ENCORE database.
67 RBPs can affect the levels of PCMTD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PCMTD2 is not available on ENCORE database.

67 RBPs can affect the gene expression of PCMTD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PCMTD2	ENSG00000203880.7	794.11530	1695.95920	-1.09470	38.26470	36.46730	HepG2	TRIM56
PCMTD2	ENSG00000203880.7	3211.25380	2124.78620	0.59570	13.29790	12.20730	HepG2	TAF15
PCMTD2	ENSG00000203880.7	1025.17190	1540.55950	-0.58760	12.89090	11.65230	HepG2	SAFB2
PCMTD2	ENSG00000203880.7	246.50590	528.26000	-1.09960	10.45430	8.37780	K562	HNRNPM
PCMTD2	ENSG00000203880.7	614.43510	1022.10460	-0.73420	9.56770	7.98020	HepG2	HNRNPM
PCMTD2	ENSG00000203880.7	1169.13420	1636.02200	-0.48480	8.14450	7.33470	HepG2	ZNF622
PCMTD2	ENSG00000203880.7	2301.05520	2988.64220	-0.37720	8.21500	7.23860	HepG2	SUCLG1
PCMTD2	ENSG00000203880.7	1079.42590	1579.27990	-0.54900	9.00460	7.19660	HepG2	YBX3
PCMTD2	ENSG00000203880.7	1372.67060	1796.54810	-0.38820	7.46230	6.48490	HepG2	SMN1
PCMTD2	ENSG00000203880.7	2352.18950	1771.22660	0.40920	7.12530	6.13540	HepG2	DKC1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 75 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PCMTD2 is not available on ENCORE database.

8 RBPs can affect the splicing of PCMTD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PCMTD2	ENSG00000203880.7	chr20	+	62890119	62890235	62887196	62887223	62891294	62891625	0.47400	0.00000	0.00000	included	HepG2	U2AF2
A5SS	PCMTD2	ENSG00000203880.7	chr20	+	62895781	62895967	62895781	62895884	62896610	62896782	0.05200	0.00003	0.00456	longer	K562	AKAP8L
SE	PCMTD2	ENSG00000203880.7	chr20	+	62899239	62899363	62896610	62896782	62904573	62904898	-0.13700	0.00019	0.00739	excluded	K562	AGGF1
SE	PCMTD2	ENSG00000203880.7	chr20	+	62890119	62890235	62887196	62887223	62891294	62891625	-0.13400	0.00042	0.05009	excluded	HepG2	LARP4
SE	PCMTD2	ENSG00000203880.7	chr20	+	62894123	62894347	62891437	62891625	62895781	62895884	0.18100	0.00045	0.05866	included	HepG2	HNRNPM
SE	PCMTD2	ENSG00000203880.7	chr20	+	62890119	62890235	62887196	62887223	62891294	62891625	0.16100	0.00207	0.05400	included	HepG2	SF3A3
SE	PCMTD2	ENSG00000203880.7	chr20	+	62899239	62899363	62896610	62896782	62904573	62904898	-0.09300	0.00378	0.05010	excluded	K562	PUS1
SE	PCMTD2	ENSG00000203880.7	chr20	+	62899239	62899363	62896610	62896782	62904573	62907583	-0.12700	0.00412	0.09665	excluded	K562	UTP18

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PCMTD2

General Information

Functions

Localization

Domains (AlphaFold: PCMTD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PCMTD2 is not avaliable on ENCORE database.

35 proteins are bound to PCMTD2 RNA:

eCLIP assay for PCMTD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PCMTD2 is not available on ENCORE database.

67 RBPs can affect the gene expression of PCMTD2 :

The Knockdown/knockout RNA-Seq assay for PCMTD2 is not available on ENCORE database.

8 RBPs can affect the splicing of PCMTD2 :

The Knockdown/knockout RNA-Seq assay for PCMTD2 is not avaliable on ENCORE database.