NTRK1

General Information

Gene Name : NTRK1
Gene ID : ENSG00000198400.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NTRK1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NTRK1	ENSG00000198400.11	0.00	0.00	0.00	ENCSR000AEF
HepG2	NTRK1	ENSG00000198400.11	0.00	0.00	0.00	ENCSR985KAT
K562	NTRK1	ENSG00000198400.11	11.65	5.28	8.46	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NTRK1 is not avaliable on ENCORE database.

Proteins bound to RNA

NTRK1 RNA is bound by 11 proteins.

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eCLIP assay for NTRK1 is not avaliable on ENCORE database.

11 proteins are bound to NTRK1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	156849145	156849224	+	3'-UTR,CDS,intron-Proximal	6.66736	18.58475	K562	AQR
chr1	156849790	156849826	+	3'-UTR,CDS,intron-Proximal	5.98985	12.46873	K562	AQR
chr1	156849949	156850017	+	intron-Proximal	5.86598	11.65826	K562	AQR
chr1	156849765	156849790	+	intron-Proximal	4.42202	11.31344	K562	AQR
chr1	156845456	156845519	+	3'-UTR,CDS,intron-Proximal	5.13114	10.49968	K562	EIF4G2
chr1	156845519	156845583	+	intron-Distal,intron-Proximal	4.52234	8.97537	K562	EIF4G2
chr1	156833699	156833778	+	intron-Distal	5.21209	8.34301	K562	TARDBP
chr1	156833129	156833241	+	intron-Distal	5.58810	7.91717	K562	PTBP1
chr1	156833888	156834047	+	intron-Distal,intron-Proximal	5.15139	7.78973	K562	TARDBP
chr1	156849803	156849943	+	3'-UTR,CDS	4.15913	7.58738	K562	SRSF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for NTRK1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NTRK1 is not available on ENCORE database.
77 RBPs can affect the levels of NTRK1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.

77 RBPs can affect the gene expression of NTRK1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NTRK1	ENSG00000198400.7	1739.06930	482.97490	1.84820	26.38750	24.55480	K562	EIF2S2
NTRK1	ENSG00000198400.7	322.72800	893.95930	-1.46990	22.77130	21.26830	K562	AQR
NTRK1	ENSG00000198400.7	618.30880	1208.37010	-0.96670	19.18740	16.32320	K562	PUM1
NTRK1	ENSG00000198400.7	122.49190	365.26120	-1.57620	17.09670	14.91120	K562	EIF4A3
NTRK1	ENSG00000198400.7	593.05730	1041.09780	-0.81190	15.02020	12.93510	K562	EIF4G2
NTRK1	ENSG00000198400.7	141.26790	366.55360	-1.37560	14.05080	12.78850	K562	HNRNPC
NTRK1	ENSG00000198400.7	201.34620	506.94900	-1.33220	14.37370	12.61220	K562	POLR2G
NTRK1	ENSG00000198400.7	457.95470	809.50440	-0.82180	13.73690	12.28190	K562	UPF1
NTRK1	ENSG00000198400.7	245.47810	508.51330	-1.05070	12.89670	11.13220	K562	SYNCRIP
NTRK1	ENSG00000198400.7	386.68500	687.17590	-0.82950	12.26850	10.70430	K562	MTPAP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.

11 RBPs can affect the splicing of NTRK1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.23200	0.00001	0.00026	included	K562	AKAP8L
SE	NTRK1	ENSG00000198400.7	chr1	+	156843424	156843751			156841414	156841547	156844362	156844418	-0.10100	0.00024	0.00363	excluded	K562	AQR
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.18600	0.00027	0.00433	included	K562	AGGF1
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.37200	0.00032	0.00698	included	K562	SF3B4
MXE	NTRK1	ENSG00000198400.7	chr1	+	156841414	156841547	156843424	156843751	156838296	156838439	156844362	156844418	-0.25900	0.00038	0.06584	2included	K562	SDAD1
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.25800	0.00041	0.00592	included	K562	EFTUD2
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.21900	0.00042	0.00343	included	K562	PUS1
RI	NTRK1	ENSG00000198400.7	chr1	+	156845311	156846002			156845311	156845458	156845871	156846002	0.18100	0.00049	0.00356	included	K562	AQR
MXE	NTRK1	ENSG00000198400.7	chr1	+	156841414	156841547	156843424	156843751	156836701	156836770	156844362	156844418	0.05400	0.00122	0.01087	1included	K562	AQR
MXE	NTRK1	ENSG00000198400.7	chr1	+	156841414	156841547	156843424	156843751	156838296	156838439	156844362	156844418	-0.24000	0.00212	0.07165	2included	K562	SAFB

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NTRK1

General Information

Functions

Localization

Domains (AlphaFold: NTRK1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NTRK1 is not avaliable on ENCORE database.

11 proteins are bound to NTRK1 RNA:

eCLIP assay for NTRK1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.

77 RBPs can affect the gene expression of NTRK1 :

The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.

11 RBPs can affect the splicing of NTRK1 :

The Knockdown/knockout RNA-Seq assay for NTRK1 is not avaliable on ENCORE database.