KCNMB3

General Information

Gene Name : KCNMB3
Gene ID : ENSG00000171121.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KCNMB3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KCNMB3	ENSG00000171121.16	3.03	3.11	3.07	ENCSR000AEF
HepG2	KCNMB3	ENSG00000171121.16	2.23	3.30	2.76	ENCSR985KAT
K562	KCNMB3	ENSG00000171121.16	12.75	13.74	13.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KCNMB3 is not avaliable on ENCORE database.

Proteins bound to RNA

KCNMB3 RNA is bound by 9 proteins.

CanvasJS.com

eCLIP assay for KCNMB3 is not avaliable on ENCORE database.

9 proteins are bound to KCNMB3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	178976859	178976925	-	5'-UTR,intron-Distal	3.67081	8.44067	K562	UCHL5
chr3	178978474	178978556	-	intron-Distal	3.89163	8.06634	K562	UCHL5
chr3	178977623	178977699	-	5'-UTR,intron-Distal,intron-Proximal	5.24205	7.69727	K562	UCHL5
chr3	178977040	178977110	-	5'-UTR,intron-Distal,intron-Proximal	4.42528	7.52225	K562	UCHL5
chr3	178968689	178968738	-	CDS,intron-Distal,intron-Proximal	4.93638	6.83215	HepG2	U2AF2
chr3	178978327	178978419	-	intron-Distal	3.91714	6.63248	K562	TRA2A
chr3	178978819	178978880	-	intron-Distal	4.79070	5.87202	K562	UCHL5
chr3	178973530	178973579	-	intron-Distal	3.45040	5.35459	K562	KHSRP
chr3	178978060	178978110	-	intron-Distal	3.87430	5.08388	K562	UCHL5
chr3	178978210	178978237	-	intron-Distal	3.32024	4.89070	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for KCNMB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KCNMB3 is not available on ENCORE database.
75 RBPs can affect the levels of KCNMB3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.

75 RBPs can affect the gene expression of KCNMB3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KCNMB3	ENSG00000171121.12	136.30840	457.03600	-1.74540	27.46630	25.78850	K562	AGGF1
KCNMB3	ENSG00000171121.12	75.72730	294.77230	-1.96070	16.30890	15.12750	HepG2	AKAP1
KCNMB3	ENSG00000171121.12	529.27660	231.72800	1.19150	12.73390	11.20750	HepG2	CIRBP
KCNMB3	ENSG00000171121.12	612.40700	340.52360	0.84660	11.25780	9.95200	K562	EIF2S2
KCNMB3	ENSG00000171121.12	306.37000	107.89580	1.50550	11.15600	9.38980	HepG2	RPS10
KCNMB3	ENSG00000171121.12	454.76000	232.97190	0.96480	9.30200	8.25840	K562	HNRNPC
KCNMB3	ENSG00000171121.12	609.32730	362.49490	0.74920	9.40450	8.17520	K562	UPF1
KCNMB3	ENSG00000171121.12	251.24750	459.53460	-0.87110	8.87810	7.84270	K562	RBM15
KCNMB3	ENSG00000171121.12	289.34810	511.78470	-0.82270	9.62420	7.78770	K562	DKC1
KCNMB3	ENSG00000171121.12	109.39970	347.02670	-1.66540	9.36190	7.16320	K562	PABPN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.

9 RBPs can affect the splicing of KCNMB3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	KCNMB3	ENSG00000171121.12	chr3	-	178969183	178969409	178968530	178968722	178976735	178976996	0.44300	0.00004	0.00599	included	K562	SUPV3L1
A5SS	KCNMB3	ENSG00000171121.12	chr3	-	178968823	178969403	178969183	178969403	178968530	178968722	-0.53200	0.00015	0.02900	shorter	HepG2	MATR3
SE	KCNMB3	ENSG00000171121.12	chr3	-	178968823	178968900	178968530	178968722	178976735	178976996	0.23500	0.00023	0.00986	included	K562	AKAP8L
SE	KCNMB3	ENSG00000171121.12	chr3	-	178969183	178969409	178968530	178968722	178976735	178976996	0.27900	0.00026	0.00551	included	K562	PUS1
SE	KCNMB3	ENSG00000171121.12	chr3	-	178968823	178968900	178968530	178968722	178976735	178976996	0.37100	0.00035	0.01198	included	K562	AGGF1
SE	KCNMB3	ENSG00000171121.12	chr3	-	178969183	178969365	178968530	178968722	178976735	178976996	0.20500	0.00041	0.07120	included	K562	MTPAP
SE	KCNMB3	ENSG00000171121.12	chr3	-	178969183	178969365	178968530	178968722	178976735	178976996	0.19600	0.00060	0.00797	included	K562	AQR
RI	KCNMB3	ENSG00000171121.12	chr3	-	178968530	178969418	178968530	178968722	178969183	178969418	0.45400	0.00088	0.05919	included	K562	PHF6
RI	KCNMB3	ENSG00000171121.12	chr3	-	178968530	178969418	178968530	178968722	178969183	178969418	-0.42600	0.00742	0.06383	excluded	K562	EFTUD2
SE	KCNMB3	ENSG00000171121.12	chr3	-	178968823	178968900	178968530	178968722	178969183	178969365	-0.37900	0.00881	0.07337	excluded	K562	AQR

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KCNMB3

General Information

Functions

Localization

Domains (AlphaFold: KCNMB3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KCNMB3 is not avaliable on ENCORE database.

9 proteins are bound to KCNMB3 RNA:

eCLIP assay for KCNMB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.

75 RBPs can affect the gene expression of KCNMB3 :

The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.

9 RBPs can affect the splicing of KCNMB3 :

The Knockdown/knockout RNA-Seq assay for KCNMB3 is not avaliable on ENCORE database.