ITM2A

General Information

Gene Name : ITM2A
Gene ID : ENSG00000078596.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITM2A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITM2A	ENSG00000078596.10	20.63	25.97	23.30	ENCSR000AEF
HepG2	ITM2A	ENSG00000078596.10	0.00	0.00	0.00	ENCSR985KAT
K562	ITM2A	ENSG00000078596.10	44.78	42.61	43.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITM2A is not avaliable on ENCORE database.

Proteins bound to RNA

ITM2A RNA is bound by 2 proteins.

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eCLIP assay for ITM2A is not avaliable on ENCORE database.

2 proteins are bound to ITM2A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	78616300	78616359	-	3'-UTR,intron-Distal	5.27966	12.61077	K562	PABPC4
chrX	78618438	78618519	-	CDS,intron-Distal,intron-Proximal	4.18368	7.36912	K562	SND1
chrX	78618136	78618185	-	CDS,intron-Distal	4.99017	7.09854	K562	SND1
chrX	78616825	78616874	-	CDS,intron-Distal,intron-Proximal	3.23557	6.91892	K562	SND1
chrX	78618077	78618136	-	CDS,intron-Distal,intron-Proximal	3.63348	6.49527	K562	SND1
chrX	78616654	78616675	-	CDS,intron-Distal	3.07718	4.31260	K562	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 6 of 6 entries

eCLIP assay for ITM2A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITM2A is not available on ENCORE database.
68 RBPs can affect the levels of ITM2A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.

68 RBPs can affect the gene expression of ITM2A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITM2A	ENSG00000078596.6	2973.44890	1390.34710	1.09660	23.71600	22.13840	K562	PUS1
ITM2A	ENSG00000078596.6	1113.75430	1979.81880	-0.82990	21.05310	18.62440	K562	EIF4G2
ITM2A	ENSG00000078596.6	780.59930	2072.37620	-1.40860	17.79200	16.47110	K562	AQR
ITM2A	ENSG00000078596.6	456.86090	1023.48440	-1.16370	15.42590	12.96710	K562	UTP3
ITM2A	ENSG00000078596.6	597.08860	1078.18960	-0.85260	13.63900	11.53960	K562	HNRNPA1
ITM2A	ENSG00000078596.6	1213.99320	2034.32410	-0.74480	13.58670	11.03920	K562	PNPT1
ITM2A	ENSG00000078596.6	520.96870	881.13040	-0.75820	12.49180	10.91880	K562	MTPAP
ITM2A	ENSG00000078596.6	364.69320	735.26980	-1.01160	13.42620	10.91220	K562	HNRNPF
ITM2A	ENSG00000078596.6	604.63840	978.92880	-0.69510	10.56180	9.23260	K562	NSUN2
ITM2A	ENSG00000078596.6	735.86310	1248.95770	-0.76320	11.40580	9.11780	K562	HNRNPL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 68 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.

8 RBPs can affect the splicing of ITM2A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ITM2A	ENSG00000078596.6	chrX	-	78616458	78616701	78616458	78616674	78616825	78617018	0.09500	0.00000	0.00000	longer	K562	AQR
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	-0.17900	0.00001	0.00026	excluded	K562	SF3B4
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	-0.11300	0.00007	0.00238	excluded	K562	SRSF1
A5SS	ITM2A	ENSG00000078596.6	chrX	-	78622948	78623164	78623043	78623164	78622709	78622770	0.18300	0.00047	0.04386	longer	K562	AGGF1
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	-0.07500	0.00052	0.01630	excluded	K562	RBM15
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	-0.08700	0.00097	0.04389	excluded	K562	HNRNPK
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	0.07100	0.00119	0.04306	included	K562	HNRNPU
SE	ITM2A	ENSG00000078596.6	chrX	-	78618919	78619051	78618438	78618636	78622601	78622856	-0.10800	0.00307	0.08527	excluded	K562	PRPF8

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITM2A

General Information

Functions

Localization

Domains (AlphaFold: ITM2A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITM2A is not avaliable on ENCORE database.

2 proteins are bound to ITM2A RNA:

eCLIP assay for ITM2A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.

68 RBPs can affect the gene expression of ITM2A :

The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.

8 RBPs can affect the splicing of ITM2A :

The Knockdown/knockout RNA-Seq assay for ITM2A is not avaliable on ENCORE database.