GBGT1

General Information

Gene Name : GBGT1
Gene ID : ENSG00000148288.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GBGT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GBGT1	ENSG00000148288.12	0.21	0.36	0.28	ENCSR000AEF
HepG2	GBGT1	ENSG00000148288.12	0.03	0.00	0.01	ENCSR985KAT
K562	GBGT1	ENSG00000148288.12	12.86	12.66	12.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GBGT1 is not avaliable on ENCORE database.

Proteins bound to RNA

GBGT1 RNA is bound by 1 proteins.

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eCLIP assay for GBGT1 is not avaliable on ENCORE database.

1 proteins are bound to GBGT1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	136031495	136031582	-	intron-Distal,intron-Proximal	5.11716	10.44900	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for GBGT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GBGT1 is not available on ENCORE database.
82 RBPs can affect the levels of GBGT1.

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The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.

82 RBPs can affect the gene expression of GBGT1 :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GBGT1	ENSG00000148288.7	1664.09960	576.86150	1.52830	76.97400	74.01320	K562	NSUN2
GBGT1	ENSG00000148288.7	1415.61820	569.15130	1.31440	39.48140	36.88740	K562	SF3A3
GBGT1	ENSG00000148288.7	1629.76050	611.65500	1.41380	32.32190	30.18370	K562	UPF1
GBGT1	ENSG00000148288.7	815.54490	203.84390	2.00020	30.43260	27.49050	K562	RBM22
GBGT1	ENSG00000148288.7	1515.40670	494.48010	1.61560	29.12420	27.27430	K562	HNRNPC
GBGT1	ENSG00000148288.7	1638.72410	599.09500	1.45160	28.83240	26.30010	K562	GRSF1
GBGT1	ENSG00000148288.7	690.53780	259.52720	1.41170	23.91770	21.57960	K562	CPSF6
GBGT1	ENSG00000148288.7	1797.44330	915.19170	0.97370	22.40460	19.98540	K562	CELF1
GBGT1	ENSG00000148288.7	615.24340	241.85470	1.34690	19.27890	16.89910	K562	METAP2
GBGT1	ENSG00000148288.7	251.20550	544.21590	-1.11530	18.77550	16.85880	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.

6 RBPs can affect the splicing of GBGT1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GBGT1	ENSG00000148288.7	chr9	-	136029741	136029942			136028788	136029648	136030564	136030699	0.11800	0.00000	0.00003	included	K562	HNRNPU
RI	GBGT1	ENSG00000148288.7	chr9	-	136028339	136030699			136028339	136029648	136030564	136030699	0.22200	0.00000	0.00002	included	K562	HNRNPU
RI	GBGT1	ENSG00000148288.7	chr9	-	136028339	136030699			136028339	136029629	136030564	136030699	-0.18300	0.00030	0.01028	excluded	K562	HNRNPC
RI	GBGT1	ENSG00000148288.7	chr9	-	136031287	136031504			136031287	136031323	136031401	136031504	-0.27800	0.00130	0.06771	excluded	K562	PPIL4
MXE	GBGT1	ENSG00000148288.7	chr9	-	136031406	136031452	136035483	136035638	136031287	136031323	136036853	136036919	0.20700	0.00167	0.03047	1included	K562	HNRNPC
MXE	GBGT1	ENSG00000148288.7	chr9	-	136031401	136031452	136035483	136035638	136031287	136031323	136036853	136036919	0.13000	0.00336	0.05203	1included	K562	HNRNPC
A3SS	GBGT1	ENSG00000148288.7	chr9	-	136030564	136030736			136030564	136030699	136031287	136031364	0.13600	0.00734	0.04049	longer	K562	AQR
RI	GBGT1	ENSG00000148288.7	chr9	-	136028339	136030699			136028339	136029648	136030564	136030699	0.11800	0.00783	0.06683	included	K562	EFTUD2
RI	GBGT1	ENSG00000148288.7	chr9	-	136028339	136030699			136028339	136029648	136030564	136030699	0.08200	0.01086	0.08273	included	K562	AKAP8L

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GBGT1

General Information

Functions

Localization

Domains (AlphaFold: GBGT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GBGT1 is not avaliable on ENCORE database.

1 proteins are bound to GBGT1 RNA:

eCLIP assay for GBGT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.

82 RBPs can affect the gene expression of GBGT1 :

The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.

6 RBPs can affect the splicing of GBGT1 :

The Knockdown/knockout RNA-Seq assay for GBGT1 is not avaliable on ENCORE database.