FAM83A

General Information

Gene Name : FAM83A
Gene ID : ENSG00000147689.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM83A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM83A	ENSG00000147689.16	0.00	0.00	0.00	ENCSR000AEF
HepG2	FAM83A	ENSG00000147689.16	0.00	0.00	0.00	ENCSR985KAT
K562	FAM83A	ENSG00000147689.16	92.34	75.08	83.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM83A is not avaliable on ENCORE database.

Proteins bound to RNA

FAM83A RNA is bound by 32 proteins.

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eCLIP assay for FAM83A is not avaliable on ENCORE database.

32 proteins are bound to FAM83A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	124221631	124221690	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42809	400.00000	K562	UPF1
chr8	124220578	124220693	+	3'-UTR,intron-Distal	6.21572	400.00000	K562	UPF1
chr8	124221322	124221339	+	3'-UTR,intron-Distal	6.09919	400.00000	K562	YBX3
chr8	124221302	124221315	+	3'-UTR,intron-Distal	6.34153	400.00000	K562	YBX3
chr8	124221295	124221302	+	3'-UTR,intron-Distal	6.08952	400.00000	K562	YBX3
chr8	124221315	124221322	+	3'-UTR,intron-Distal	6.51374	400.00000	K562	YBX3
chr8	124221295	124221340	+	3'-UTR,intron-Distal	5.56067	400.00000	K562	UPF1
chr8	124220516	124220578	+	3'-UTR,intron-Distal	6.54359	400.00000	K562	UPF1
chr8	124220861	124220894	+	3'-UTR,intron-Distal	4.78846	400.00000	K562	UPF1
chr8	124222172	124222228	+	3'-UTR	5.34984	400.00000	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 178 entries

eCLIP assay for FAM83A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM83A is not available on ENCORE database.
64 RBPs can affect the levels of FAM83A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM83A is not available on ENCORE database.

64 RBPs can affect the gene expression of FAM83A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM83A	ENSG00000147689.12	4002.34700	6598.86790	-0.72140	24.81150	23.12120	K562	FXR1
FAM83A	ENSG00000147689.12	9222.48190	5262.23010	0.80940	20.70130	19.14270	K562	HNRNPC
FAM83A	ENSG00000147689.12	10544.71330	7630.84150	0.46650	16.95900	15.32190	K562	NSUN2
FAM83A	ENSG00000147689.12	11791.75340	6923.30110	0.76810	15.81020	13.70100	K562	WDR3
FAM83A	ENSG00000147689.12	3598.64190	6019.50100	-0.74220	12.05830	9.77500	K562	NELFE
FAM83A	ENSG00000147689.12	4169.45360	6503.11390	-0.64130	10.29510	8.78480	K562	HSPD1
FAM83A	ENSG00000147689.12	11911.49620	8159.78380	0.54570	10.28750	8.38740	K562	HNRNPA1
FAM83A	ENSG00000147689.12	10426.95380	7994.82590	0.38310	9.42250	8.30540	K562	DDX47
FAM83A	ENSG00000147689.12	7308.59160	10942.29370	-0.58220	9.58510	8.04370	K562	PUF60
FAM83A	ENSG00000147689.12	12120.32700	9036.08840	0.42360	8.61370	7.05080	K562	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 64 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM83A is not available on ENCORE database.

13 RBPs can affect the splicing of FAM83A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.08600	0.00000	0.00001	excluded	K562	FXR1
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.10000	0.00000	0.00089	excluded	K562	EIF3G
A5SS	FAM83A	ENSG00000147689.12	chr8	+	124192003	124192199			124192003	124192111	124192371	124192469	-0.26100	0.00000	0.00365	shorter	K562	EIF4G2
MXE	FAM83A	ENSG00000147689.12	chr8	+	124194265	124195576	124204042	124204210	124191286	124192469	124206263	124206388	0.07700	0.00000	0.00001	1included	K562	FXR1
MXE	FAM83A	ENSG00000147689.12	chr8	+	124194265	124195576	124204042	124204210	124191286	124192469	124206263	124206388	0.08900	0.00000	0.00016	1included	K562	EIF3G
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.07100	0.00001	0.00063	excluded	K562	PTBP1
SE	FAM83A	ENSG00000147689.12	chr8	+	124192003	124192111			124191199	124191377	124192371	124192469	-0.63200	0.00003	0.00211	excluded	K562	TARDBP
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.06500	0.00003	0.00299	excluded	K562	HNRNPK
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.06400	0.00004	0.00278	excluded	K562	TARDBP
SE	FAM83A	ENSG00000147689.12	chr8	+	124204042	124204210			124194265	124195576	124206263	124206388	-0.08000	0.00007	0.00423	excluded	K562	PRPF8

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM83A

General Information

Functions

Localization

Domains (AlphaFold: FAM83A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM83A is not avaliable on ENCORE database.

32 proteins are bound to FAM83A RNA:

eCLIP assay for FAM83A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM83A is not available on ENCORE database.

64 RBPs can affect the gene expression of FAM83A :

The Knockdown/knockout RNA-Seq assay for FAM83A is not available on ENCORE database.

13 RBPs can affect the splicing of FAM83A :

The Knockdown/knockout RNA-Seq assay for FAM83A is not avaliable on ENCORE database.