CLASP1

General Information

Gene Name : CLASP1
Gene ID : ENSG00000074054.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CLASP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CLASP1	ENSG00000074054.18	18.13	21.29	19.71	ENCSR000AEF
HepG2	CLASP1	ENSG00000074054.18	21.21	22.70	21.95	ENCSR985KAT
K562	CLASP1	ENSG00000074054.18	12.52	12.08	12.30	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CLASP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CLASP1 RNA is bound by 52 proteins.

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eCLIP assay for CLASP1 is not avaliable on ENCORE database.

52 proteins are bound to CLASP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	122236126	122236355	-	intron-Distal	7.71453	69.16541	K562	EIF4G2
chr2	122257822	122257911	-	intron-Distal	7.09663	61.94159	HepG2	PTBP1
chr2	122257796	122257906	-	intron-Distal	8.13466	58.12328	K562	PTBP1
chr2	122236355	122236612	-	intron-Distal	7.20316	47.56016	K562	EIF4G2
chr2	122236143	122236262	-	intron-Distal	7.26205	46.17404	HepG2	DKC1
chr2	122096641	122096727	-	3'-UTR,intron-Distal	5.63786	39.11672	K562	TARDBP
chr2	122339796	122339880	-	intron-Distal	5.61703	38.16253	HepG2	PTBP1
chr2	122096608	122096718	-	3'-UTR,intron-Distal	4.98935	35.89507	K562	EIF4G2
chr2	122340043	122340132	-	intron-Distal	6.07010	35.48464	HepG2	PTBP1
chr2	122236434	122236529	-	intron-Distal	7.59813	32.02670	HepG2	DKC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 342 entries

eCLIP assay for CLASP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CLASP1 is not available on ENCORE database.
61 RBPs can affect the levels of CLASP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CLASP1 is not available on ENCORE database.

61 RBPs can affect the gene expression of CLASP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CLASP1	ENSG00000074054.13	4132.98630	2634.00370	0.64980	23.38610	22.30420	HepG2	SRSF1
CLASP1	ENSG00000074054.13	4083.51580	2624.94480	0.63740	15.15730	13.86150	HepG2	QKI
CLASP1	ENSG00000074054.13	1556.06500	2489.89120	-0.67820	13.59020	12.62450	HepG2	TIAL1
CLASP1	ENSG00000074054.13	1953.37700	1246.79500	0.64760	9.97460	8.89840	K562	HNRNPC
CLASP1	ENSG00000074054.13	2695.18520	1748.58120	0.62410	9.73970	8.31450	HepG2	FUBP3
CLASP1	ENSG00000074054.13	2097.91770	2910.59620	-0.47240	9.75980	8.20050	HepG2	HNRNPA2B1
CLASP1	ENSG00000074054.13	3244.65170	2367.78650	0.45440	8.54150	7.64520	HepG2	TAF15
CLASP1	ENSG00000074054.13	1573.50960	2451.53790	-0.63970	8.35790	7.46180	K562	PUS1
CLASP1	ENSG00000074054.13	4285.30640	3429.96870	0.32110	6.33410	5.61600	HepG2	SSB
CLASP1	ENSG00000074054.13	3164.92850	2593.68570	0.28710	5.43180	4.54050	HepG2	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 66 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CLASP1 is not available on ENCORE database.

23 RBPs can affect the splicing of CLASP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.35400	0.00005	included	K562	SRSF1
SE	CLASP1	ENSG00000074054.13	chr2	-	122159443	122159446	122159084	122159248	122161946	122162010	-0.35500	0.00020	excluded	K562	SF3B4
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.38900	0.00002	included	HepG2	HNRNPK
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.53800	0.00000	included	HepG2	PTBP1
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.37400	0.00008	included	HepG2	MATR3
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.49900	0.00019	included	K562	U2AF1
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	-0.32100	0.00051	excluded	HepG2	DDX6
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.36000	0.00009	included	HepG2	SRSF1
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.33300	0.00042	included	K562	HNRNPK
SE	CLASP1	ENSG00000074054.13	chr2	-	122166599	122166623	122165046	122165291	122168441	122168545	0.60300	0.00000	included	K562	PTBP1

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CLASP1

General Information

Functions

Localization

Domains (AlphaFold: CLASP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CLASP1 is not avaliable on ENCORE database.

52 proteins are bound to CLASP1 RNA:

eCLIP assay for CLASP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CLASP1 is not available on ENCORE database.

61 RBPs can affect the gene expression of CLASP1 :

The Knockdown/knockout RNA-Seq assay for CLASP1 is not available on ENCORE database.

23 RBPs can affect the splicing of CLASP1 :

The Knockdown/knockout RNA-Seq assay for CLASP1 is not avaliable on ENCORE database.