CD53

General Information

Gene Name : CD53
Gene ID : ENSG00000143119.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CD53)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CD53	ENSG00000143119.13	469.33	440.27	454.80	ENCSR000AEF
HepG2	CD53	ENSG00000143119.13	0.00	0.00	0.00	ENCSR985KAT
K562	CD53	ENSG00000143119.13	87.55	87.93	87.74	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CD53 is not avaliable on ENCORE database.

Proteins bound to RNA

CD53 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for CD53 is not avaliable on ENCORE database.

10 proteins are bound to CD53 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	111436949	111437010	+	CDS,intron-Distal	4.22916	22.66486	K562	SND1
chr1	111434083	111434148	+	CDS,intron-Proximal	3.60816	20.33657	K562	PRPF8
chr1	111439288	111439352	+	CDS,intron-Distal	4.58748	18.59539	K562	SND1
chr1	111435074	111435143	+	CDS	4.03241	15.66886	K562	SND1
chr1	111437582	111437636	+	CDS,intron-Distal	3.78423	13.86742	K562	SND1
chr1	111440460	111440496	+	CDS,intron-Distal	4.64891	13.39409	K562	SND1
chr1	111441745	111441787	+	CDS,intron-Proximal	3.81133	12.57125	K562	SND1
chr1	111440496	111440514	+	CDS,intron-Distal	4.47349	11.28118	K562	SND1
chr1	111437636	111437671	+	CDS,intron-Distal	3.87281	10.48685	K562	SND1
chr1	111442004	111442056	+	3'-UTR	3.58301	9.91125	K562	IGF2BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for CD53 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CD53 is not available on ENCORE database.
85 RBPs can affect the levels of CD53.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CD53 is not available on ENCORE database.

85 RBPs can affect the gene expression of CD53 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CD53	ENSG00000143119.8	3651.89070	1245.55340	1.55180	100.70590	97.62040	K562	UPF1
CD53	ENSG00000143119.8	415.03090	1381.26350	-1.73470	63.34810	60.72570	K562	FXR1
CD53	ENSG00000143119.8	181.67060	735.14120	-2.01670	46.17360	43.41800	K562	POLR2G
CD53	ENSG00000143119.8	4841.54750	2473.06310	0.96910	38.50560	35.43950	K562	PUM2
CD53	ENSG00000143119.8	655.21730	1715.90680	-1.38890	37.21820	33.92220	K562	MAGOH
CD53	ENSG00000143119.8	609.98860	1528.27780	-1.32510	37.15400	33.74880	K562	SF3B4
CD53	ENSG00000143119.8	240.64740	737.36520	-1.61550	33.04580	30.57040	K562	SYNCRIP
CD53	ENSG00000143119.8	186.84580	655.02720	-1.80970	32.37040	29.55610	K562	SAFB
CD53	ENSG00000143119.8	284.78250	958.41990	-1.75080	31.95260	29.38690	K562	PCBP3
CD53	ENSG00000143119.8	515.91930	1108.25540	-1.10310	31.52700	29.23150	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CD53 is not available on ENCORE database.

17 RBPs can affect the splicing of CD53 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CD53	ENSG00000143119.8	chr1	+	111440430	111440514			111437581	111437677	111441745	111442198	-0.27000	0.00000	0.00034	excluded	K562	AKAP8L
SE	CD53	ENSG00000143119.8	chr1	+	111436948	111437023			111434966	111435155	111441745	111442550	-0.22700	0.00000	0.00001	excluded	K562	PUS1
SE	CD53	ENSG00000143119.8	chr1	+	111437581	111437677			111434966	111435155	111441745	111442473	0.47400	0.00000	0.00020	included	K562	U2AF2
SE	CD53	ENSG00000143119.8	chr1	+	111436948	111437023			111434966	111435155	111437581	111437677	-0.15700	0.00000	0.00000	excluded	K562	U2AF2
SE	CD53	ENSG00000143119.8	chr1	+	111440430	111440514			111437581	111437677	111441745	111442198	-0.37700	0.00000	0.00000	excluded	K562	RBM15
A3SS	CD53	ENSG00000143119.8	chr1	+	111434941	111435155			111434966	111435155	111434013	111434093	0.08500	0.00000	0.00000	longer	K562	AQR
SE	CD53	ENSG00000143119.8	chr1	+	111437581	111437677			111434966	111435155	111441745	111442473	0.46900	0.00001	0.00034	included	K562	U2AF1
SE	CD53	ENSG00000143119.8	chr1	+	111439274	111439355			111437581	111437677	111441745	111442550	-0.42200	0.00002	0.00069	excluded	K562	U2AF2
SE	CD53	ENSG00000143119.8	chr1	+	111440430	111440514			111437581	111437677	111441745	111442550	-0.28600	0.00003	0.00116	excluded	K562	SF3B4
MXE	CD53	ENSG00000143119.8	chr1	+	111434013	111434093	111434966	111435155	111415774	111415870	111436948	111437023	0.12200	0.00004	0.00408	1included	K562	TAF15

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CD53

General Information

Functions

Localization

Domains (AlphaFold: CD53)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CD53 is not avaliable on ENCORE database.

10 proteins are bound to CD53 RNA:

eCLIP assay for CD53 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CD53 is not available on ENCORE database.

85 RBPs can affect the gene expression of CD53 :

The Knockdown/knockout RNA-Seq assay for CD53 is not available on ENCORE database.

17 RBPs can affect the splicing of CD53 :

The Knockdown/knockout RNA-Seq assay for CD53 is not avaliable on ENCORE database.