CCNY

General Information

Gene Name : CCNY
Gene ID : ENSG00000108100.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCNY)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCNY	ENSG00000108100.17	30.62	29.86	30.24	ENCSR000AEF
HepG2	CCNY	ENSG00000108100.17	35.67	39.42	37.55	ENCSR985KAT
K562	CCNY	ENSG00000108100.17	43.27	49.23	46.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCNY is not avaliable on ENCORE database.

Proteins bound to RNA

CCNY RNA is bound by 55 proteins.

CanvasJS.com

eCLIP assay for CCNY is not avaliable on ENCORE database.

55 proteins are bound to CCNY RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	35858220	35858263	+	3'-UTR	3.45461	400.00000	K562	TIA1
chr10	35715078	35715181	+	intron-Distal	4.68701	70.74323	K562	AGGF1
chr10	35715201	35715256	+	intron-Distal	5.53598	52.60986	K562	AGGF1
chr10	35858208	35858214	+	3'-UTR	4.48254	39.10932	K562	TIA1
chr10	35715181	35715201	+	intron-Distal	4.56422	38.92475	K562	AGGF1
chr10	35715363	35715433	+	intron-Distal	6.46014	38.06199	K562	AGGF1
chr10	35625678	35625806	+	5'-UTR,intron-Distal	4.35406	35.80791	HepG2	DDX3X
chr10	35715085	35715203	+	intron-Distal	5.06812	33.71672	K562	HNRNPL
chr10	35715160	35715207	+	intron-Distal	5.54627	31.11162	HepG2	HNRNPL
chr10	35729042	35729076	+	intron-Distal	5.35000	30.57829	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 276 entries

eCLIP assay for CCNY is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCNY is not available on ENCORE database.
92 RBPs can affect the levels of CCNY.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCNY is not available on ENCORE database.

92 RBPs can affect the gene expression of CCNY :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCNY	ENSG00000108100.13	1555.23900	3211.78260	-1.04620	43.44060	41.82320	HepG2	PTBP1
CCNY	ENSG00000108100.13	1821.11400	3517.19650	-0.94960	39.52650	37.43430	K562	AGGF1
CCNY	ENSG00000108100.13	1884.90560	3574.38510	-0.92320	37.05330	35.55970	HepG2	NELFE
CCNY	ENSG00000108100.13	1376.88610	3191.01530	-1.21260	28.90490	26.90090	HepG2	HNRNPK
CCNY	ENSG00000108100.13	2068.06620	3329.09120	-0.68680	21.68080	20.23370	HepG2	RECQL
CCNY	ENSG00000108100.13	1612.36810	3498.32690	-1.11750	20.36330	18.74900	HepG2	NCBP2
CCNY	ENSG00000108100.13	2384.63620	3490.25880	-0.54960	15.74920	14.81880	HepG2	SRSF1
CCNY	ENSG00000108100.13	2238.47190	3343.83590	-0.57900	15.69540	14.46400	HepG2	SF3B4
CCNY	ENSG00000108100.13	3723.87230	2075.82470	0.84300	14.57010	12.52490	K562	BOP1
CCNY	ENSG00000108100.13	1941.79300	3156.87980	-0.70110	13.36450	11.94980	HepG2	RBM25
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 106 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCNY is not available on ENCORE database.

20 RBPs can affect the splicing of CCNY :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CCNY	ENSG00000108100.13	chr10	+	35819331	35819438			35819051	35819171	35841946	35842113	0.06400	0.00000	included	K562	AQR
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.08600	0.00000	excluded	K562	PUS1
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.11200	0.00013	excluded	K562	U2AF1
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.07400	0.00028	excluded	K562	HNRNPM
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.07700	0.00033	excluded	K562	HNRNPL
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.07500	0.00000	excluded	K562	RBM15
SE	CCNY	ENSG00000108100.13	chr10	+	35814891	35814927			35805450	35805551	35818900	35818958	-0.08200	0.00000	excluded	K562	AGGF1
MXE	CCNY	ENSG00000108100.13	chr10	+	35805450	35805551	35814891	35814927	35772331	35772406	35818900	35818958	0.09100	0.00051	1included	K562	HNRNPL
MXE	CCNY	ENSG00000108100.13	chr10	+	35805450	35805551	35814891	35814927	35772331	35772406	35818900	35818964	0.09000	0.00001	1included	K562	PUS1
MXE	CCNY	ENSG00000108100.13	chr10	+	35772331	35772406	35790428	35790463	35625801	35626135	35818900	35818958	-0.11900	0.00013	2included	K562	PUS1

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCNY

General Information

Functions

Localization

Domains (AlphaFold: CCNY)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCNY is not avaliable on ENCORE database.

55 proteins are bound to CCNY RNA:

eCLIP assay for CCNY is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCNY is not available on ENCORE database.

92 RBPs can affect the gene expression of CCNY :

The Knockdown/knockout RNA-Seq assay for CCNY is not available on ENCORE database.

20 RBPs can affect the splicing of CCNY :

The Knockdown/knockout RNA-Seq assay for CCNY is not avaliable on ENCORE database.