PABPC3

General Information

Gene Name       : PABPC3
Gene ID             : ENSG00000151846.8
Essential Gene : No

Functions

Localization(RBPImage: PABPC3)

Domains (AlphaFold: PABPC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PABPC3ENSG00000151846.80.550.590.57ENCSR000AEF
HepG2PABPC3ENSG00000151846.80.170.430.30ENCSR985KAT
K562PABPC3ENSG00000151846.80.460.540.50ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: PABPC3ENCSR051WANPABPC3cell-free sampleReleased






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PABPC3K562shRNABGKLV32-49,BGKLV32-50BGKLV32-1,BGKLV32-20.0,0.0NotSatisfiedENCODE3
PABPC3K562shRNABGKLV38-47,BGKLV38-48BGKLV38-1,BGKLV38-2no band on the position,no band on the positionNotSatisfiedENCODE3
PABPC3K562shRNABGKLV38-49,BGKLV38-50BGKLV38-1,BGKLV38-2no band on the position,no band on the positionNotSatisfiedENCODE3
PABPC3K562shRNABGKLV38-51,BGKLV38-52BGKLV38-1,BGKLV38-2no band on the position,no band on the positionNotSatisfiedENCODE3
PABPC3K562shRNABGKLV38-53,BGKLV38-54BGKLV38-1,BGKLV38-2NotSatisfiedENCODE3
PABPC3HepG2shRNABGHLV22-35,BGHLV22-36BGHLV22-1,BGHLV22-2redo transfection,redo transfectionNotSatisfiedENCODE3
PABPC3HepG2shRNABGHLV37-33,BGHLV37-34BGHLV37-1,BGHLV37-2no band,NotSatisfiedENCODE3
PABPC3HepG2shRNABGHLV37-35,BGHLV37-36BGHLV37-1,BGHLV37-2no band,NotSatisfiedENCODE3


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
PABPC3PABPC3ReleasedENCODE4


  Localization Image in HepG2  
    PABPC3: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Speckles
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for PABPC3 is not avaliable on ENCORE database.


    • The binding motifs of PABPC3

      • Trulli

    Proteins bound to RNA

    • NO known proteins bind on PABPC3 RNA with finished eCLIP experiments on ENCORE database.





    eCLIP assay for PABPC3 is not avaliable on ENCORE database.






    NO known proteins are bound to PABPC3 RNA with finished eCLIP experiments on ENCORE database.





    eCLIP assay for PABPC3 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for PABPC3 is not available on ENCORE database.

    • 17 RBPs can affect the levels of PABPC3.  








    The Knockdown/knockout RNA-Seq assay for PABPC3 is not available on ENCORE database.





    17 RBPs can affect the gene expression of PABPC3 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    PABPC3ENSG00000151846.72.8094020.71760-2.882503.328902.35030HepG2PABPC1
    PABPC3ENSG00000151846.715.4813055.24600-1.835304.580703.46910K562FIP1L1
    PABPC3ENSG00000151846.79.1849040.87450-2.153904.272903.21010K562FMR1
    PABPC3ENSG00000151846.78.2314034.64580-2.073503.595602.54160K562FTO
    PABPC3ENSG00000151846.76.5390038.35160-2.552105.000403.93690K562GPKOW
    PABPC3ENSG00000151846.714.2426045.44030-1.673803.129902.13490K562HNRNPM
    PABPC3ENSG00000151846.735.8635074.90220-1.062502.689101.90490K562HSPD1
    PABPC3ENSG00000151846.787.2943044.449100.973602.778701.95120K562KIF1C
    PABPC3ENSG00000151846.79.8264032.75000-1.736802.400601.53890K562KRR1
    PABPC3ENSG00000151846.795.6427049.793500.941602.596201.71980K562MBNL1
    PABPC3ENSG00000151846.79.8412037.43590-1.927503.519402.52550K562METAP2
    PABPC3ENSG00000151846.784.0756034.901201.268303.287002.31000K562NAA15
    PABPC3ENSG00000151846.73.2993047.66810-3.852808.730706.54170K562PABPC1
    PABPC3ENSG00000151846.712.9419044.92980-1.795602.697301.72220K562PABPN1
    PABPC3ENSG00000151846.716.3552062.71460-1.939105.895904.62320K562PPIG
    PABPC3ENSG00000151846.78.6347036.47730-2.078803.419002.33480K562SF3B1
    PABPC3ENSG00000151846.726.5365072.48670-1.449704.086002.40850K562SSRP1
    PABPC3ENSG00000151846.722.2135066.29870-1.577504.280602.66130K562STAU1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for PABPC3 is not available on ENCORE database.






    No RBPs affect the alternative splcing events of PABPC3 on ENCORE database.





    The Knockdown/knockout RNA-Seq assay for PABPC3 is not avaliable on ENCORE database.