ENCORE RBNS:PABPC3

PABPC3 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	PABPC3
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	2

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PABPC3-1300	RBNS	20-20	1300	PABPC3_0nM_1300.fastq.gz
PABPC3-5	RBNS	20-20	5	PABPC3_0nM_5.fastq.gz
PABPC3-80	RBNS	20-20	80	PABPC3_0nM_80.fastq.gz
PABPC3-input	CN	20-20	0	PABPC3_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PABPC3-input-cntl	ENCSR384MUT	experiment	RNA Bind-n-Seq	PABPC3	G3BP1-BGKcLV11-58	Yes	Released	2020-11-23	ENCODE4			1712
chris-burge:PABPC3	ENCSR051WAN	experiment	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1713
chris-burge:lib-PABPC3-1300	ENCLB101VBY	library	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1734
chris-burge:lib-PABPC3-5	ENCLB673DDB	library	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-34	Yes	Released	2020-11-23	ENCODE4			1735
chris-burge:lib-PABPC3-80	ENCLB669JSH	library	RNA Bind-n-Seq	PABPC3	G3BP1-BGKcLV11-57	Yes	Released	2020-11-23	ENCODE4			1736
chris-burge:lib-PABPC3-input	ENCLB264VVC	library	RNA Bind-n-Seq	PABPC3	G3BP1-BGKcLV11-58	Yes	Released	2020-11-23	ENCODE4			1737
chris-burge:PABPC3_0nM_input.fastq.gz	ENCFF677VPY	file_fastq	RNA Bind-n-Seq	PABPC3	G3BP1-BGKcLV11-58	Yes	Released	2020-11-23	ENCODE4			1777
chris-burge:PABPC3_0nM_1300.fastq.gz	ENCFF836ATV	file_fastq	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1786
chris-burge:PABPC3_0nM_5.fastq.gz	ENCFF225UDG	file_fastq	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-34	Yes	Released	2020-11-23	ENCODE4			1787
chris-burge:PABPC3_0nM_80.fastq.gz	ENCFF033GJN	file_fastq	RNA Bind-n-Seq	PABPC3	G3BP1-BGKcLV11-57	Yes	Released	2020-11-23	ENCODE4			1788
chris-burge:PABPC3_0nM_6mer_logo0.PWM.txt	ENCFF661OOB	file_pwm	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1828
chris-burge:PABPC3_0nM_6mer_logo1.PWM.txt	ENCFF089UZQ	file_pwm	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1829
chris-burge:PABPC3_0nM_enrichment_R.4mers.txt	ENCFF173TII	file_enrichment	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1830
chris-burge:PABPC3_0nM_enrichment_R.5mers.txt	ENCFF902CGC	file_enrichment	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1831
chris-burge:PABPC3_0nM_enrichment_R.6mers.txt	ENCFF823FZD	file_enrichment	RNA Bind-n-Seq	PABPC3	CIRBP-BGKcLV11-33	Yes	Released	2020-11-23	ENCODE4			1832

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PABPC3_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PABPC3_0nM_input.fastq.gz	ENCODE4
PABPC3_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PABPC3_0nM_input.fastq.gz	ENCODE4
PABPC3_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PABPC3_0nM_input.fastq.gz	ENCODE4
PABPC3_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
PABPC3_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PABPC3_0nM_1300.fastq.gz,PABPC3_0nM_5.fastq.gz,PABPC3_0nM_80.fastq.gz,PABPC3_0nM_input.fastq.gz		ENCODE4
PABPC3_0nM_6mer_logo1.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PABPC3_0nM_1300.fastq.gz,PABPC3_0nM_5.fastq.gz,PABPC3_0nM_80.fastq.gz,PABPC3_0nM_input.fastq.gz		ENCODE4
PABPC3_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PABPC3_0nM_1300.fastq.gz,PABPC3_0nM_5.fastq.gz,PABPC3_0nM_80.fastq.gz,PABPC3_0nM_input.fastq.gz		ENCODE4
PABPC3_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PABPC3_0nM_1300.fastq.gz,PABPC3_0nM_5.fastq.gz,PABPC3_0nM_80.fastq.gz,PABPC3_0nM_input.fastq.gz		ENCODE4
PABPC3_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PABPC3_0nM_1300.fastq.gz,PABPC3_0nM_5.fastq.gz,PABPC3_0nM_80.fastq.gz,PABPC3_0nM_input.fastq.gz		ENCODE4
PABPC3_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
PABPC3.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4