SF3B1

Experiment Information

eCLIP

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
SF3B1	506	K562	ENCSR133QEA	ENCSR496UBM	ENCAB022ALQ	ab66774	GR216813-1	Released	ENCODE3

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SF3B1	ENCAB022ALQ	ab66774	GR216813-1			Released, ENCODE3	BGHLV35-41, Released, ENCODE3	BGKcLV11-93, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
SF3B1	K562	shRNA	ENCSR047QHX	ENCSR424QCW	SF3B1_BGKLV36-43,SF3B1_BGKLV36-44	NT_BGKLV36-1,NT_BGKLV36-2	39.1,46.9	Released	ENCODE3
SF3B1	HepG2	shRNA			BGHLV35-39,BGHLV35-40	BGHLV35-1,BGHLV35-2		NotSatisfied	ENCODE3
SF3B1	HepG2	shRNA	ENCSR896CFV	ENCSR264TUE	SF3B1_BGHLV35-41,SF3B1_BGHLV35-42	NT_BGHLV35-1,NT_BGHLV35-2	63.6,75.0	Released	ENCODE3
SF3B1	K562	CRISPR			BGKcLV08-71,BGKcLV08-72	BGKcLV08-1,BGKcLV08-2	20.9,12.9	NotSatisfied	ENCODE4
SF3B1	K562	CRISPR			BGKcLV11-91,BGKcLV11-92	BGKcLV11-1,BGKcLV11-2	62.0,57.3	NotSatisfied	ENCODE4
SF3B1	K562	CRISPR	ENCSR544ZCR	ENCSR292PXV	SF3B1-BGKcLV11-93,SF3B1-BGKcLV11-94	NT-BGKcLV11-1,NT-BGKcLV11-2	61.9,64.8	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available