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SF3B1
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
506
506-control
Exp_UID
506
506
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR133QEA
ENCSR496UBM
ENCODE_alias
gene-yeo:506
gene-yeo:506-control
RBP
SF3B1
SF3B1
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB022ALQ
ENCAB022ALQ
Antibody
ab66774
ab66774
Lot_num
GR216813-1
GR216813-1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
192
218
Replicate Information
Rep_UID
506_01
506_02
506_INPUT
Exp UID
506
506
506
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB203AIU
ENCLB354LPS
ENCLB413HWU
ENCODE_alias
gene-yeo:506_01
gene-yeo:506_02
gene-yeo:506_INPUT
Biosample Name
K562_061215
K562_070715
K562_061215
Biosample_ENCODE_Accession
ENCBS318IMK
ENCBS517UIR
ENCBS318IMK
Biosample_ENCODE_Alias
gene-yeo:K562_061215
gene-yeo:K562_070715
gene-yeo:K562_061215
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-06-12
2015-07-07
2015-06-12
Culture_End_Date
2015-06-30
2015-08-04
2015-06-30
Passage
4
5
4
QC Stats
Experiment QC
506
506-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
506_01
506_02
506_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
506_01
506_02
506_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A03
A04
none
inline_barcode_2
G07
F05
none
i5_barcode
504
504
503
i7_barcode
702
702
701
Sequencing Information
Rep_UID
506_01
506_02
506_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/506.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
506
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
506.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
506
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=506)
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