RP11-618P17.4

General Information

Gene Name       : RP11-618P17.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-618P17.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-618P17.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-618P17.4 RNA is bound by 34 proteins.  







eCLIP assay for RP11-618P17.4 is not avaliable on ENCORE database.





34 proteins are bound to RP11-618P17.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193489144234891478+3'-UTR,5'-UTR,intron-Distal3.807818.50021K562YBX3
chr193489126234891327+3'-UTR,5'-UTR,intron-Distal3.907299.92560HepG2UPF1
chr193489133234891386+3'-UTR,5'-UTR,intron-Distal3.044389.53380K562UPF1
chr193489127734891316+3'-UTR,5'-UTR,intron-Distal4.4317218.59888HepG2SUB1
chr193489141234891485+3'-UTR,5'-UTR,intron-Distal4.0621215.20799K562UPF1
chr193488733034887380+CDS,intron-Proximal4.148516.81564HepG2PRPF8
chr193488730334887337+CDS,intron-Proximal3.167594.80505K562PCBP1
chr193488749034887508+CDS3.1365337.36730K562YBX3
chr193488730134887336+CDS,intron-Proximal4.0322112.52208HepG2G3BP1
chr193488748534887562+CDS,intron-Proximal3.472587.34404K562IGF2BP2
chr193488720534887239+CDS,intron-Proximal4.231528.49476HepG2G3BP1
chr193488720534887225+CDS,intron-Proximal4.390976.49041HepG2RPS3
chr193488722534887301+CDS4.8816015.02961HepG2RPS3
chr193488748434887551+CDS,intron-Proximal3.104115.08053K562PCBP1
chr193488748534887509+CDS,intron-Proximal3.4299013.80391HepG2G3BP1
chr193488749734887561+CDS3.2264415.61563HepG2PABPN1
chr193488730934887336+CDS,intron-Proximal3.122806.79577HepG2RPS3
chr193488730934887336+CDS,intron-Proximal3.099164.20283K562APOBEC3C
chr193488749134887556+CDS3.4853533.81480K562METAP2
chr193488720434887237+CDS,intron-Proximal3.6699926.09410K562RPS3
chr193488733334887340+CDS,intron-Proximal3.1813710.10141K562AQR
chr193488723734887303+CDS3.4170632.24721K562RPS3
chr193488749334887559+CDS3.119455.32969HepG2PPIG
chr193488721334887298+CDS4.1847739.09233K562METAP2
chr193488720634887229+CDS4.221844.26679K562GRWD1
chr193488724434887300+CDS4.3114111.79057HepG2G3BP1
chr193488748434887533+CDS,intron-Proximal3.2190514.96373HepG2RPS3
chr193488732034887389+CDS,intron-Proximal4.693515.25202HepG2AQR
chr193488729934887326+CDS3.155157.83502HepG2PABPN1
chr193488750934887560+CDS3.4530915.95339HepG2G3BP1
chr193488748634887583+CDS,intron-Proximal3.182495.54603HepG2AQR
chr193489064534890684+CDS,intron-Distal3.5120726.69925K562METAP2
chr193489115434891209+3'-UTR,intron-Distal3.2198636.18156K562PABPC4
chr193489097934891016+3'-UTR,intron-Distal4.0312753.73039K562IGF2BP2
chr193489264034892685+3'-UTR,intron-Distal3.163616.07920K562FAM120A
chr193489026334890343+intron-Distal,intron-Proximal4.3865616.22190K562RBFOX2
chr193489080334890830+CDS,intron-Distal,intron-Proximal3.734794.34343K562ZC3H11A
chr193489097534891041+3'-UTR,intron-Distal3.0465653.86732K562DDX55
chr193489026734890330+intron-Distal,intron-Proximal3.120904.38122K562EFTUD2
chr193489115334891169+3'-UTR,intron-Distal3.5450414.60751K562LIN28B
chr193489108634891115+3'-UTR,intron-Distal3.7533638.29285K562PABPC4
chr193489021434890240+CDS,intron-Distal4.5385110.25516HepG2G3BP1
chr193489097434891038+3'-UTR,intron-Distal3.0674610.62372HepG2PABPN1
chr193489089534890974+3'-UTR,CDS,intron-Distal3.157555.39374HepG2PABPN1
chr193489068434890690+CDS,intron-Distal3.7699116.09565K562METAP2
chr193489091234890929+3'-UTR,CDS,intron-Distal4.1485523.31787K562PABPC4
chr193489105334891111+3'-UTR,intron-Distal3.181707.14114HepG2PCBP2
chr193489113234891154+3'-UTR,intron-Distal4.2714959.81239K562PABPC4
chr193489011134890214+CDS,intron-Distal,intron-Proximal4.1109322.83720HepG2G3BP1
chr193489052334890535+CDS,intron-Distal3.663257.93092K562DDX24
chr193489011234890234+CDS,intron-Distal4.0362444.68439K562RPS3
chr193489011134890199+CDS,intron-Distal,intron-Proximal3.220776.15187K562ZNF800
chr193489196334892029+3'-UTR,intron-Distal3.214947.61432HepG2UPF1
chr193489101634891048+3'-UTR,intron-Distal4.9334665.05941K562IGF2BP2
chr193489115234891192+3'-UTR,intron-Distal3.069218.72997K562PCBP1
chr193489097734891044+3'-UTR,intron-Distal5.32802400.00000K562PABPC4
chr193489080434890838+3'-UTR,CDS,intron-Distal,intron-Proximal3.570217.86100HepG2RPS3
chr193489050834890532+CDS,intron-Distal3.0386748.03085K562YBX3
chr193489064034890691+CDS,intron-Distal,intron-Proximal3.4228311.44078HepG2RPS3
chr193489096234890977+3'-UTR,intron-Distal5.74141400.00000K562PABPC4
chr193489056334890621+intron-Distal,intron-Proximal7.1548425.85394K562EFTUD2
chr193489115234891213+3'-UTR,intron-Distal3.378393.70435HepG2LIN28B
chr193489057234890621+intron-Distal,intron-Proximal4.320453.76397K562SF3B4
chr193489080434890867+3'-UTR,CDS,intron-Distal,intron-Proximal3.6198216.63322HepG2G3BP1
chr193489011734890217+CDS,intron-Distal3.6384027.66065K562DDX24
chr193489092934890962+3'-UTR,CDS,intron-Distal5.29484400.00000K562PABPC4
chr193489112934891152+3'-UTR,intron-Distal4.8187945.73688HepG2SUB1
chr193489067834890690+CDS,intron-Distal3.652774.08867HepG2LARP4
chr193489062434890691+CDS,intron-Distal,intron-Proximal3.9112444.39183K562DDX24
chr193489313034893139+intron-Distal3.2765412.63920K562UPF1
chr193489000434890063+intron-Distal,intron-Proximal5.0023211.02762K562SF3B4
chr193489062634890645+CDS,intron-Distal3.5262116.89798K562METAP2
chr193489104434891086+3'-UTR,intron-Distal4.45267400.00000K562PABPC4
chr193489081034890842+3'-UTR,CDS,intron-Distal3.360116.24461K562IGF2BP1
chr193489055134890614+intron-Distal,intron-Proximal4.322658.04968HepG2EFTUD2
chr193489307734893170+intron-Distal4.5299016.00342HepG2UPF1
chr193489012334890223+CDS,intron-Distal3.1455116.05003HepG2RPS3
chr193489118234891210+3'-UTR,intron-Distal4.2939837.13960K562NOLC1
chr193489096434891039+3'-UTR,intron-Distal3.5099639.12575K562PCBP1
chr193489067034890684+CDS,intron-Distal3.341699.89337HepG2PPIG
chr193489011034890205+CDS,intron-Distal,intron-Proximal4.1445910.22494HepG2PABPN1
chr193489089434890932+3'-UTR,CDS,intron-Distal3.3936923.12367K562YBX3
chr193489080434890844+3'-UTR,CDS,intron-Distal,intron-Proximal3.8827616.77817K562METAP2
chr193489115134891170+3'-UTR,intron-Distal4.3171042.48794K562NOLC1
chr193489080434890829+CDS,intron-Distal,intron-Proximal4.845746.37221HepG2LARP4
chr193489095134891039+3'-UTR,intron-Distal3.1814321.90883HepG2LARP4
chr193489308134893162+intron-Distal4.830165.32242HepG2PABPN1
chr193489265734892697+3'-UTR,intron-Distal4.4146212.41920K562UPF1
chr193489104734891121+3'-UTR,intron-Distal3.9324110.21822HepG2PCBP1
chr193489255734892604+3'-UTR,intron-Distal3.4648918.64705K562UPF1
chr193489024034890316+intron-Distal,intron-Proximal4.3560712.58875K562AQR
chr193489065234890726+CDS,intron-Distal,intron-Proximal4.170716.81564HepG2PRPF8
chr193489115234891184+3'-UTR,intron-Distal6.33904400.00000HepG2SUB1
chr193489111534891132+3'-UTR,intron-Distal5.13904400.00000K562PABPC4
chr193489121634891239+3'-UTR,intron-Distal,polyA_site4.377548.45080K562IGF2BP1
chr193489046234890493+CDS,intron-Distal3.420986.98493HepG2G3BP1
chr193489302834893056+3'-UTR,intron-Distal5.177547.11441K562PUM2
chr193489080534890839+3'-UTR,CDS,intron-Distal,intron-Proximal3.8552923.16903K562DDX24
chr193489260434892626+3'-UTR,intron-Distal3.126519.45965K562UPF1
chr193489308334893134+intron-Distal3.5512143.27244K562PABPC4
chr193489011234890205+CDS,intron-Distal3.5707116.89029K562METAP2
chr193489050734890536+CDS,intron-Distal3.8568516.11133K562METAP2
chr193489068434890691+CDS,intron-Distal,intron-Proximal3.303729.89337HepG2PPIG
chr193489106934891139+3'-UTR,intron-Distal3.0665122.41300K562IGF2BP2
chr193489065834890691+CDS,intron-Distal,intron-Proximal3.092245.12571K562ZC3H11A
chr193489107234891126+3'-UTR,intron-Distal4.573974.41611HepG2IGF2BP3
chr193489112034891151+3'-UTR,intron-Distal3.1117813.98493K562NOLC1
chr193489096134891028+3'-UTR,intron-Distal3.7251336.16654HepG2PCBP2
chr193489117034891182+3'-UTR,intron-Distal4.2132042.36649K562NOLC1
chr193489106734891106+3'-UTR,intron-Distal3.1949510.09096K562DDX6
chr193489259134892646+3'-UTR,intron-Distal3.837643.48322HepG2UPF1
chr193489103934891132+3'-UTR,intron-Distal3.7432242.98498K562PCBP1
chr193489531434895418+5'-UTR,CDS,intron-Distal5.7878516.59654K562DDX3X
chr193489111134891159+3'-UTR,intron-Distal3.028199.52047HepG2PCBP2
chr193489062334890640+CDS,intron-Distal,intron-Proximal3.257275.43859HepG2G3BP1
chr193489064434890690+CDS,intron-Distal4.8401321.18562HepG2G3BP1
chr193489213534892187+3'-UTR,intron-Distal3.146044.32401HepG2UPF1
chr193489062334890626+CDS,intron-Distal,intron-Proximal3.7799411.87348K562METAP2
chr193489062934890690+CDS,intron-Distal3.2118311.45285K562DDX6
chr193489118434891213+3'-UTR,intron-Distal6.53777400.00000HepG2SUB1
chr193489096334891047+3'-UTR,intron-Distal3.3725014.23965HepG2PCBP1
chr193489195734892019+3'-UTR,intron-Distal4.579064.77384K562HNRNPC
chr193489104834891069+3'-UTR,intron-Distal3.9492429.43785K562IGF2BP2
chr193489025534890365+intron-Distal,intron-Proximal4.887596.64533HepG2RBFOX2
chr193489308334893130+intron-Distal3.8619949.09142K562UPF1
chr193489273134892775+3'-UTR,intron-Distal4.598064.44583HepG2UPF1
chr193489116934891216+3'-UTR,intron-Distal3.738489.97629K562IGF2BP1
chr193489314534893198+intron-Distal4.2946024.57700K562UPF1
chr193489273834892763+3'-UTR,intron-Distal4.956096.77594K562FAM120A
chr193488736134887374+intron-Proximal4.8957913.38267K562AQR
chr193488743934887479+intron-Proximal6.3151213.04469K562SF3B4
chr193488736634887474+intron-Proximal5.400798.70072K562RBM22
chr193488735134887415+intron-Proximal5.5337013.59652K562EFTUD2
chr193488756234887602+intron-Proximal5.527318.88118K562AQR
chr193488734034887361+intron-Proximal5.4194413.23057K562AQR
chr193488741934887486+intron-Proximal4.507525.25202HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-618P17.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-618P17.4 is not available on ENCORE database.

  • 2 RBPs can affect the levels of RP11-618P17.4.  








The Knockdown/knockout RNA-Seq assay for RP11-618P17.4 is not available on ENCORE database.





2 RBPs can affect the gene expression of RP11-618P17.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-618P17.4ENSG00000266953.29.698300.0000099999.999903.032002.46680HepG2ZNF622
RP11-618P17.4ENSG00000266953.213.169400.725104.182802.303301.41450K562CELF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-618P17.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-618P17.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-618P17.4 is not avaliable on ENCORE database.