RNF214

General Information

Gene Name : RNF214
Gene ID : ENSG00000167257.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF214)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF214	ENSG00000167257.10	12.57	9.41	10.99	ENCSR000AEF
HepG2	RNF214	ENSG00000167257.10	11.11	13.18	12.14	ENCSR985KAT
K562	RNF214	ENSG00000167257.10	14.62	15.29	14.95	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	RNF214-BGRSLV07-RS293		RNF214	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RNF214	Ribo-STAMP-293T	shRNA			BGRSLV05-9,BGRSLV05-10	BGRSLV05-1,BGRSLV05-2		NotSatisfied	ENCORE2
RNF214	Ribo-STAMP-293T	shRNA			RNF214-BGRSLV07-19,RNF214-BGRSLV07-20	NT-BGRSLV07-1,NT-BGRSLV07-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF214 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF214 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for RNF214 is not avaliable on ENCORE database.

18 proteins are bound to RNF214 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	117117535	117117680	+	CDS,intron-Proximal	5.74059	25.48444	K562	UCHL5
chr11	117152051	117152106	+	CDS	5.66527	12.72740	K562	LIN28B
chr11	117150624	117150683	+	CDS	5.62082	12.00022	K562	UCHL5
chr11	117156043	117156104	+	3'-UTR	5.04603	11.15990	K562	PUM2
chr11	117117593	117117662	+	CDS	5.52240	10.53537	K562	ZNF622
chr11	117155941	117156027	+	3'-UTR	3.85151	10.31435	K562	PUM2
chr11	117152711	117152831	+	CDS,intron-Distal,intron-Proximal	4.54679	9.97474	K562	PCBP1
chr11	117115235	117115299	+	CDS	5.18831	9.06345	K562	UCHL5
chr11	117150683	117150721	+	CDS,intron-Proximal	4.30085	8.92108	K562	UCHL5
chr11	117109290	117109342	+	CDS,intron-Proximal	5.44234	7.81430	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 39 entries

eCLIP assay for RNF214 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF214 is not available on ENCORE database.
23 RBPs can affect the levels of RNF214.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF214 is not available on ENCORE database.

23 RBPs can affect the gene expression of RNF214 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF214	ENSG00000167257.6	1567.56910	1166.33810	0.42640	6.46250	5.52460	K562	DDX47
RNF214	ENSG00000167257.6	403.38800	583.59230	-0.53280	5.14140	4.36780	HepG2	UTP3
RNF214	ENSG00000167257.6	733.74600	1032.41160	-0.49270	4.62600	3.64990	K562	GRSF1
RNF214	ENSG00000167257.6	946.13030	1291.63300	-0.44910	4.18420	3.37820	K562	AKAP8L
RNF214	ENSG00000167257.6	1116.02460	1459.77310	-0.38740	4.62550	3.37370	K562	PUM2
RNF214	ENSG00000167257.6	306.52110	484.09130	-0.65930	3.91400	3.18900	HepG2	DDX6
RNF214	ENSG00000167257.6	565.18700	746.15020	-0.40070	3.86950	3.08280	HepG2	AUH
RNF214	ENSG00000167257.6	992.73000	1241.30780	-0.32240	3.47160	2.84910	K562	AGGF1
RNF214	ENSG00000167257.6	732.62300	930.37540	-0.34470	3.35810	2.47060	K562	MTPAP
RNF214	ENSG00000167257.6	994.26340	1248.09270	-0.32800	3.08320	2.46260	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF214 is not available on ENCORE database.

5 RBPs can affect the splicing of RNF214 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RNF214	ENSG00000167257.6	chr11	+	117150596	117150720	117150623	117150720	117117524	117117664	0.11400	0.00000	0.00000	longer	K562	AQR
RI	RNF214	ENSG00000167257.6	chr11	+	117109316	117110576	117109316	117109827	117110516	117110576	-0.05700	0.00017	0.01556	excluded	K562	DROSHA
RI	RNF214	ENSG00000167257.6	chr11	+	117109316	117110576	117109316	117109827	117110516	117110576	0.05800	0.00067	0.00909	included	HepG2	RBM22
SE	RNF214	ENSG00000167257.6	chr11	+	117153461	117153566	117153119	117153252	117153830	117153926	-0.32200	0.00069	0.01496	excluded	HepG2	U2AF1
A5SS	RNF214	ENSG00000167257.6	chr11	+	117109316	117109827	117109316	117109362	117110516	117110576	-0.20600	0.00123	0.06382	shorter	K562	SRSF1
SE	RNF214	ENSG00000167257.6	chr11	+	117109621	117109827	117109316	117109362	117110516	117110576	-0.24200	0.00237	0.04176	excluded	K562	SRSF1
A3SS	RNF214	ENSG00000167257.6	chr11	+	117153082	117153252	117153119	117153252	117152880	117152986	0.07300	0.00761	0.04176	longer	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF214

General Information

Functions

Localization

Domains (AlphaFold: RNF214)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF214 is not avaliable on ENCORE database.

18 proteins are bound to RNF214 RNA:

eCLIP assay for RNF214 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF214 is not available on ENCORE database.

23 RBPs can affect the gene expression of RNF214 :

The Knockdown/knockout RNA-Seq assay for RNF214 is not available on ENCORE database.

5 RBPs can affect the splicing of RNF214 :

The Knockdown/knockout RNA-Seq assay for RNF214 is not avaliable on ENCORE database.