RDM1

General Information

Gene Name       : RDM1
Gene ID             : ENSG00000278023.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RDM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RDM1ENSG00000278023.57.006.536.77ENCSR000AEF
HepG2RDM1ENSG00000278023.50.220.220.22ENCSR985KAT
K562RDM1ENSG00000278023.55.063.634.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RDM1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RDM1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RDM1 is not avaliable on ENCORE database.






NO known proteins are bound to RDM1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RDM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RDM1 is not available on ENCORE database.

  • 33 RBPs can affect the levels of RDM1.  








The Knockdown/knockout RNA-Seq assay for RDM1 is not available on ENCORE database.





33 RBPs can affect the gene expression of RDM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RDM1ENSG00000187456.937.6256088.08360-1.227203.679202.30010K562AARS
RDM1ENSG00000187456.9321.95200249.836700.365801.929101.43900K562AGGF1
RDM1ENSG00000187456.939.86880111.80610-1.487705.899304.99870K562DDX47
RDM1ENSG00000187456.947.3773091.97170-0.957002.708901.80620K562EFTUD2
RDM1ENSG00000187456.912.9691057.11040-2.138704.649203.31380K562EIF3A
RDM1ENSG00000187456.939.6253098.48770-1.313504.546903.18270K562EIF3D
RDM1ENSG00000187456.945.36910101.93410-1.167904.473403.47220K562EIF3G
RDM1ENSG00000187456.982.87130154.97940-0.903104.025103.03700K562EIF4A3
RDM1ENSG00000187456.9114.6603058.774400.964002.460101.66190K562FIP1L1
RDM1ENSG00000187456.940.54690161.17390-1.9910013.8466012.59760K562FXR1
RDM1ENSG00000187456.9243.58930129.017200.916803.289801.92620K562HNRNPA2B1
RDM1ENSG00000187456.9134.76880202.11010-0.584702.712401.53460K562IGF2BP3
RDM1ENSG00000187456.913.2821039.59360-1.575802.449601.57700K562KRR1
RDM1ENSG00000187456.9108.97910208.79890-0.938105.865104.62540K562MAGOH
RDM1ENSG00000187456.9430.61120112.873001.9316013.6786010.93440K562PABPN1
RDM1ENSG00000187456.980.26730185.76920-1.210606.730105.18310K562PCBP2
RDM1ENSG00000187456.9162.22600100.313000.693402.402201.62840K562PCBP3
RDM1ENSG00000187456.9246.56520134.212600.877302.883601.39480K562PPP1R8
RDM1ENSG00000187456.930.1336089.49870-1.570504.905503.90960K562PRPF8
RDM1ENSG00000187456.971.51980202.86540-1.5041012.1580010.81650K562PTBP1
RDM1ENSG00000187456.9143.70830219.19200-0.609102.098901.38760K562PUF60
RDM1ENSG00000187456.9364.39950257.791300.499202.625702.09350K562PUS1
RDM1ENSG00000187456.9342.34490251.201900.446502.590902.01460K562RBM15
RDM1ENSG00000187456.981.73730194.49330-1.250708.285506.71730K562RBM22
RDM1ENSG00000187456.921.0672091.17460-2.113607.751406.37090K562RPS19
RDM1ENSG00000187456.966.99850159.78390-1.253905.323203.87110K562RPS3
RDM1ENSG00000187456.960.04290141.63600-1.238106.617205.25820K562SF3B4
RDM1ENSG00000187456.993.88470198.88200-1.083006.467505.39820K562SRSF1
RDM1ENSG00000187456.9145.2209090.686300.679202.477701.37330K562SRSF7
RDM1ENSG00000187456.9171.63010105.143100.706802.848001.54860K562SSB
RDM1ENSG00000187456.930.9634077.17500-1.317604.037203.04030K562SYNCRIP
RDM1ENSG00000187456.9124.05660201.26810-0.698103.253302.48590K562TARDBP
RDM1ENSG00000187456.9159.7823099.758300.679502.683901.81960K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RDM1 is not available on ENCORE database.





3 RBPs can affect the splicing of RDM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERDM1ENSG00000187456.9chr17-342516073425177634249158342496793425251834252641-0.500000.000000.00000excludedK562SRSF1
SERDM1ENSG00000187456.9chr17-342516073425177634249158342496793425251834252641-0.277000.002820.08514excludedK562FXR1
MXERDM1ENSG00000187456.9chr17-3424958034249679342516073425177634247190342472763425251834252641-0.421000.000000.000032includedK562SRSF1
MXERDM1ENSG00000187456.9chr17-3425251834252641342570793425725934249580342496793425763534257731-0.313000.001320.052142includedK562FXR1
MXERDM1ENSG00000187456.9chr17-34249580342496793425251834252641342471903424727634257079342572590.255000.000020.006441includedK562EWSR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RDM1 is not avaliable on ENCORE database.