RBFA

General Information

Gene Name       : RBFA
Gene ID             : ENSG00000101546.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBFA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBFAENSG00000101546.1216.2326.6121.42ENCSR000AEF
HepG2RBFAENSG00000101546.1233.4929.4831.48ENCSR985KAT
K562RBFAENSG00000101546.1218.8119.0018.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBFA is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBFA RNA is bound by 19 proteins.  







eCLIP assay for RBFA is not avaliable on ENCORE database.





19 proteins are bound to RBFA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr187780597477806158+3'-UTR,CDS,intron-Distal,intron-Proximal4.249423.72779HepG2LARP4
chr187780601477806128+3'-UTR,CDS,intron-Distal,intron-Proximal3.431033.79741HepG2GRWD1
chr187780584177805965+3'-UTR,CDS,intron-Distal3.788664.51739HepG2BCLAF1
chr187780602977806138+3'-UTR,CDS,intron-Distal,intron-Proximal4.514154.82934K562RBM15
chr187780601877806154+3'-UTR,CDS,intron-Distal,intron-Proximal4.177334.49585HepG2LSM11
chr187780589577805977+3'-UTR,CDS,intron-Distal3.164683.26275K562BUD13
chr187780601777806142+3'-UTR,CDS,intron-Distal,intron-Proximal3.454624.77136HepG2PPIG
chr187779445877794582+5'-UTR,CDS3.677554.77154HepG2NCBP2
chr187779449277794569+5'-UTR,CDS3.615795.36986K562RBM15
chr187779446777794574+5'-UTR,CDS5.152536.05264HepG2DDX3X
chr187779446877794628+5'-UTR,CDS3.035593.30188K562DDX3X
chr187779457077794619+CDS3.490023.34231K562RBM15
chr187780421177804286+CDS,intron-Distal,intron-Proximal3.496856.43326K562UCHL5
chr187780573977805824+CDS,intron-Distal,intron-Proximal4.353013.93614HepG2AQR
chr187779465177794662+CDS,intron-Proximal4.035986.95612HepG2PRPF8
chr187779739877797579+CDS,intron-Distal,intron-Proximal3.275407.75618HepG2GRWD1
chr187780427577804329+CDS,intron-Distal,intron-Proximal4.977367.21051K562PRPF8
chr187779465277794685+CDS,intron-Proximal4.799479.56266K562AQR
chr187779464777794734+CDS,intron-Proximal3.539793.96535HepG2AQR
chr187780575177805804+CDS,intron-Distal,intron-Proximal4.125508.13013K562AQR
chr187780427877804334+CDS,intron-Distal,intron-Proximal5.017358.11807HepG2PRPF8
chr187780420777804291+CDS,intron-Distal,intron-Proximal3.797644.80912HepG2PPIG
chr187779750277797582+CDS,intron-Distal,intron-Proximal3.346735.90285HepG2PRPF8
chr187779543077795488+intron-Distal3.682383.68481HepG2HNRNPM
chr187779832377798377+intron-Distal4.969065.02942K562EFTUD2
chr187780428577804412+intron-Distal,intron-Proximal5.2023820.70668K562AQR
chr187779827877798377+intron-Distal3.755165.82826HepG2PRPF4
chr187779537277795429+intron-Distal4.405723.03671K562HNRNPM
chr187779480177794868+intron-Distal3.953183.02181K562PRPF8
chr187779830177798377+intron-Distal3.850083.60936K562FUS
chr187780466477804765+intron-Distal3.825903.48722HepG2PRPF4
chr187779812577798171+intron-Distal5.365276.79597HepG2XPO5
chr187779470977794757+intron-Distal,intron-Proximal3.842333.79442K562AQR
chr187779466377794805+intron-Distal,intron-Proximal3.9498213.20924HepG2EFTUD2
chr187779718577797300+intron-Distal,intron-Proximal3.819383.60936K562FUS
chr187779610977796196+intron-Distal3.393876.60828HepG2QKI
chr187780354477803678+intron-Distal4.684866.10679HepG2RBFOX2
chr187779536977795430+intron-Distal4.638019.77080HepG2HNRNPM
chr187779818977798301+intron-Distal3.951253.60521K562FUS
chr187779466277794701+intron-Proximal4.4875510.85246HepG2PRPF8
chr187779468577794709+intron-Proximal4.3509110.30697K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBFA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBFA is not available on ENCORE database.

  • 48 RBPs can affect the levels of RBFA.  








The Knockdown/knockout RNA-Seq assay for RBFA is not available on ENCORE database.





48 RBPs can affect the gene expression of RBFA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBFAENSG00000101546.8302.28320525.85500-0.798806.157705.25930HepG2DDX3X
RBFAENSG00000101546.8291.67450451.72180-0.631103.531102.84120HepG2DDX6
RBFAENSG00000101546.8454.48930602.97630-0.407902.296201.55020HepG2EIF4G2
RBFAENSG00000101546.8344.90190514.23480-0.576203.258202.42900HepG2FIP1L1
RBFAENSG00000101546.8243.95030415.67690-0.768902.542301.57140HepG2FTO
RBFAENSG00000101546.8179.00220258.70770-0.531302.174801.38670HepG2GEMIN5
RBFAENSG00000101546.8322.72610470.34630-0.543403.032102.36600HepG2GPKOW
RBFAENSG00000101546.8241.53660337.32410-0.481903.150402.50700HepG2HNRNPU
RBFAENSG00000101546.8428.78640344.565800.315402.187901.52750HepG2ILF2
RBFAENSG00000101546.8249.55480487.07690-0.964807.519306.51850HepG2MATR3
RBFAENSG00000101546.8290.33550457.83970-0.657103.286202.22340HepG2MTPAP
RBFAENSG00000101546.8447.84780632.59190-0.498304.149503.21530HepG2NOL12
RBFAENSG00000101546.8180.41150322.65250-0.838703.289402.08810HepG2NONO
RBFAENSG00000101546.8170.66660373.01340-1.128007.895206.23710HepG2PCBP2
RBFAENSG00000101546.8318.22740458.97710-0.528404.178003.53610HepG2PTBP1
RBFAENSG00000101546.8294.09530603.89640-1.0380012.2595011.12360HepG2PUF60
RBFAENSG00000101546.8263.75900382.60210-0.536604.146903.41930HepG2PUS1
RBFAENSG00000101546.8444.82130568.18470-0.353102.435501.94080HepG2RBM22
RBFAENSG00000101546.8277.95640451.15680-0.698805.740704.80140HepG2RBM25
RBFAENSG00000101546.8392.02800300.403500.384002.486101.86960HepG2SAFB2
RBFAENSG00000101546.8379.87110526.33930-0.470502.234301.62750HepG2SF3A3
RBFAENSG00000101546.8350.39580477.88860-0.447703.323502.68270HepG2SF3B4
RBFAENSG00000101546.8332.82210494.33360-0.570702.546301.79730HepG2SNRNP70
RBFAENSG00000101546.8459.38580641.73110-0.482304.974404.35780HepG2SRFBP1
RBFAENSG00000101546.8336.79840498.79830-0.566605.032004.44380HepG2SRSF1
RBFAENSG00000101546.8324.42680596.30470-0.8782010.436209.32410HepG2SRSF5
RBFAENSG00000101546.8378.59500484.58210-0.356102.251801.61730HepG2SRSF7
RBFAENSG00000101546.8116.52930349.91130-1.5863013.0260011.74020HepG2SUPV3L1
RBFAENSG00000101546.8316.09660437.57270-0.469202.618101.90990HepG2TARDBP
RBFAENSG00000101546.8446.39200590.04250-0.402502.430201.61520HepG2TUFM
RBFAENSG00000101546.8277.98940206.722400.427202.006901.36040HepG2UCHL5
RBFAENSG00000101546.8358.98610466.78260-0.378802.710202.01720HepG2UPF1
RBFAENSG00000101546.8613.98590450.660100.446104.206603.49260HepG2UTP3
RBFAENSG00000101546.8594.87800482.397600.302301.968001.47390K562AGGF1
RBFAENSG00000101546.8676.21290501.951200.429802.983902.30470K562AKAP8L
RBFAENSG00000101546.8297.95520613.07230-1.0410010.935909.88190K562AQR
RBFAENSG00000101546.8243.82910352.45290-0.531602.718201.85250K562BOP1
RBFAENSG00000101546.8171.12640364.26710-1.089909.512407.72640K562EFTUD2
RBFAENSG00000101546.8363.28190490.41620-0.432903.139202.37930K562EIF2S2
RBFAENSG00000101546.8374.40390244.316000.615704.538703.53070K562EIF3G
RBFAENSG00000101546.8244.78700381.31220-0.639404.068103.02720K562FMR1
RBFAENSG00000101546.8226.56680323.20040-0.512502.476701.61340K562FTO
RBFAENSG00000101546.8134.39330271.59500-1.015004.301603.37700K562G3BP2
RBFAENSG00000101546.8223.10590357.79390-0.681404.387803.39390K562GPKOW
RBFAENSG00000101546.8185.26000432.22030-1.2222013.0648011.84460K562HNRNPC
RBFAENSG00000101546.8474.23900325.711600.541903.045002.06250K562HNRNPM
RBFAENSG00000101546.8362.51840558.10440-0.622506.100904.76260K562HNRNPU
RBFAENSG00000101546.8250.67730350.62060-0.484102.731801.51230K562NCBP2
RBFAENSG00000101546.8179.65530326.75530-0.863005.983104.52900K562PCBP2
RBFAENSG00000101546.8167.17980354.47530-1.084308.441407.12570K562PRPF8
RBFAENSG00000101546.8268.07410356.84370-0.412702.301301.68850K562PTBP1
RBFAENSG00000101546.8558.22070808.47880-0.534404.610603.56140K562PUF60
RBFAENSG00000101546.8376.26580497.83610-0.403902.080701.59730K562PUS1
RBFAENSG00000101546.8230.14210342.08240-0.571802.984102.10840K562RBM22
RBFAENSG00000101546.8204.04400340.28840-0.737904.144702.93530K562SF3B1
RBFAENSG00000101546.8116.76010349.84390-1.5832017.9370016.15840K562SRSF1
RBFAENSG00000101546.8174.13940343.13450-0.978506.927405.26910K562SUPV3L1
RBFAENSG00000101546.8556.16950719.08240-0.370602.960301.64690K562TROVE2
RBFAENSG00000101546.8239.30940363.20270-0.601903.514902.36030K562UCHL5
RBFAENSG00000101546.8460.68680630.21170-0.452104.257003.38440K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBFA is not available on ENCORE database.





10 RBPs can affect the splicing of RBFA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBFAENSG00000101546.8chr18+7780124777801397777985047779861777802134778022190.127000.005190.07799includedK562SRSF1
SERBFAENSG00000101546.8chr18+778021347780221977798504777986177780421177804285-0.056000.004820.07370excludedHepG2U2AF1
SERBFAENSG00000101546.8chr18+777985047779861777797329777975067780213477802219-0.120000.001240.04417excludedK562HNRNPU
SERBFAENSG00000101546.8chr18+777985047779861777797329777975067780213477802219-0.142000.002530.08165excludedK562SF3B1
MXERBFAENSG00000101546.8chr18+77798470777986177780213477802219777973297779750677804211778042850.052000.002000.036321includedHepG2U2AF1
MXERBFAENSG00000101546.8chr18+7779850477798617778021347780221977797329777975067780421177804285-0.287000.002010.055192includedK562EFTUD2
MXERBFAENSG00000101546.8chr18+7779850477798617778021347780221977797329777975067780421177804285-0.169000.003920.077882includedHepG2XRN2
MXERBFAENSG00000101546.8chr18+77798504777986177780213477802219777973297779750677804211778042850.082000.000000.000581includedHepG2RBFOX2
MXERBFAENSG00000101546.8chr18+77798504777986177780213477802219777973297779750677804211778042850.052000.000970.018611includedHepG2HNRNPUL1
MXERBFAENSG00000101546.8chr18+77802134778022197780421177804285777973297779750677805773778063920.119000.002520.082091includedK562HNRNPU
MXERBFAENSG00000101546.8chr18+77798504777986177780213477802219777973297779750677804211778042850.171000.001100.088101includedHepG2XRCC6
MXERBFAENSG00000101546.8chr18+7779850477798617778021347780221977797329777975067780421177804285-0.316000.000100.004442includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBFA is not avaliable on ENCORE database.