LL22NC03-80A10.6

General Information

Gene Name : LL22NC03-80A10.6
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LL22NC03-80A10.6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Proteins bound to RNA

LL22NC03-80A10.6 RNA is bound by 8 proteins.

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

8 proteins are bound to LL22NC03-80A10.6 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	22660570	22660650	+	intron-Distal	4.02287	5.80937	K562	EXOSC5
chr22	22658951	22658996	+	intron-Distal	4.87309	6.73731	K562	EXOSC5
chr22	22659513	22659559	+	intron-Distal	3.61821	6.13018	K562	EXOSC5
chr22	22659350	22659390	+	intron-Distal	3.93435	5.20902	K562	EXOSC5
chr22	22660182	22660233	+	intron-Distal	3.97945	5.20960	K562	EXOSC5
chr22	22658953	22659011	+	intron-Distal	4.42509	3.86368	HepG2	HNRNPM
chr22	22659750	22659841	+	intron-Distal	4.88893	4.05245	HepG2	EXOSC5
chr22	22658950	22659009	+	intron-Distal	5.47852	7.65271	K562	HNRNPM
chr22	22659559	22659601	+	intron-Distal	5.20318	8.04096	K562	EXOSC5
chr22	22658305	22658381	+	intron-Proximal	5.33282	9.47372	K562	TRA2A
chr22	22661343	22661423	+	intron-Distal,intron-Proximal	4.59745	11.83008	HepG2	PRPF8
chr22	22658306	22658362	+	intron-Proximal	3.03125	4.78328	K562	ZNF622
chr22	22664028	22664079	+	intron-Proximal	4.49905	6.28383	K562	KHSRP
chr22	22661592	22661658	+	intron-Proximal	3.14974	8.91678	K562	UCHL5
chr22	22661593	22661657	+	intron-Proximal	3.38292	3.60157	HepG2	GRWD1
chr22	22658307	22658325	+	intron-Proximal	4.11126	5.57819	K562	UCHL5
chr22	22661162	22661205	+	intron-Proximal	3.40053	5.17903	K562	UCHL5
chr22	22657612	22657663	+	intron-Proximal	4.46510	4.29290	K562	TRA2A
chr22	22661653	22661702	+	intron-Proximal	3.77903	3.42844	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LL22NC03-80A10.6 is not available on ENCORE database.
43 RBPs can affect the levels of LL22NC03-80A10.6.

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

43 RBPs can affect the gene expression of LL22NC03-80A10.6 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LL22NC03-80A10.6	ENSG00000272779.1	160.05650	75.77010	1.07880	4.13500	3.50240	HepG2	AKAP1
LL22NC03-80A10.6	ENSG00000272779.1	150.44040	81.59400	0.88260	3.63570	2.96040	HepG2	BOP1
LL22NC03-80A10.6	ENSG00000272779.1	103.91000	59.56590	0.80270	2.25780	1.55510	HepG2	CIRBP
LL22NC03-80A10.6	ENSG00000272779.1	99.30370	56.05550	0.82490	2.74360	2.07990	HepG2	CKAP4
LL22NC03-80A10.6	ENSG00000272779.1	107.14720	59.33880	0.85240	2.55700	1.80930	HepG2	DDX55
LL22NC03-80A10.6	ENSG00000272779.1	201.67540	113.00760	0.83550	3.21120	2.57170	HepG2	ETF1
LL22NC03-80A10.6	ENSG00000272779.1	125.89220	54.78920	1.20010	5.35940	4.19730	HepG2	EWSR1
LL22NC03-80A10.6	ENSG00000272779.1	138.88740	91.48520	0.60220	2.21980	1.37340	HepG2	HNRNPA2B1
LL22NC03-80A10.6	ENSG00000272779.1	125.38610	62.74150	0.99880	3.46930	2.69170	HepG2	HNRNPK
LL22NC03-80A10.6	ENSG00000272779.1	111.76080	63.03050	0.82620	2.51230	1.86560	HepG2	IGF2BP2
LL22NC03-80A10.6	ENSG00000272779.1	122.56660	67.23100	0.86630	1.99370	1.30160	HepG2	MSI2
LL22NC03-80A10.6	ENSG00000272779.1	139.37330	94.22440	0.56470	1.85030	1.34930	HepG2	PUF60
LL22NC03-80A10.6	ENSG00000272779.1	80.02020	45.32910	0.81980	2.04110	1.35550	HepG2	RRP9
LL22NC03-80A10.6	ENSG00000272779.1	144.28980	92.85310	0.63580	2.03420	1.45520	HepG2	SF3A3
LL22NC03-80A10.6	ENSG00000272779.1	136.56040	75.79230	0.84930	3.02310	2.53390	HepG2	SRSF1
LL22NC03-80A10.6	ENSG00000272779.1	154.61260	86.30880	0.84100	2.84520	1.82850	HepG2	SRSF3
LL22NC03-80A10.6	ENSG00000272779.1	110.60200	59.08370	0.90440	2.69280	2.02400	HepG2	SUPV3L1
LL22NC03-80A10.6	ENSG00000272779.1	93.51190	59.77460	0.64550	1.71970	1.30550	HepG2	TIAL1
LL22NC03-80A10.6	ENSG00000272779.1	185.51040	71.05310	1.38440	7.36680	6.34900	HepG2	U2AF1
LL22NC03-80A10.6	ENSG00000272779.1	69.11540	34.91130	0.98520	2.82610	2.05850	HepG2	UCHL5
LL22NC03-80A10.6	ENSG00000272779.1	127.39130	79.50240	0.68010	2.33760	1.77690	HepG2	UTP3
LL22NC03-80A10.6	ENSG00000272779.1	179.86780	90.56550	0.98980	6.12980	5.39940	HepG2	ZNF622
LL22NC03-80A10.6	ENSG00000272779.1	559.81740	411.25210	0.44480	2.85110	2.27530	K562	AGGF1
LL22NC03-80A10.6	ENSG00000272779.1	601.00500	449.01880	0.42050	3.66250	2.60010	K562	ATP5C1
LL22NC03-80A10.6	ENSG00000272779.1	693.16740	491.44570	0.49610	4.74250	3.16430	K562	CCDC124
LL22NC03-80A10.6	ENSG00000272779.1	321.46110	222.04780	0.53370	2.51350	1.53360	K562	EIF3D
LL22NC03-80A10.6	ENSG00000272779.1	468.14590	609.19720	-0.38000	2.60290	1.68890	K562	EIF4G2
LL22NC03-80A10.6	ENSG00000272779.1	513.45920	309.95960	0.72810	5.55460	3.74560	K562	HNRNPK
LL22NC03-80A10.6	ENSG00000272779.1	469.49380	307.22610	0.61170	3.78700	2.68700	K562	HNRNPM
LL22NC03-80A10.6	ENSG00000272779.1	574.89730	454.11950	0.34010	1.99930	1.30670	K562	KIF1C
LL22NC03-80A10.6	ENSG00000272779.1	185.90280	325.48000	-0.80800	6.24130	4.77460	K562	MATR3
LL22NC03-80A10.6	ENSG00000272779.1	736.84160	508.73200	0.53430	2.33070	1.50810	K562	MBNL1
LL22NC03-80A10.6	ENSG00000272779.1	552.49080	356.58650	0.63160	2.74870	1.86940	K562	NAA15
LL22NC03-80A10.6	ENSG00000272779.1	373.57280	257.64520	0.53590	3.40230	2.02960	K562	NCBP2
LL22NC03-80A10.6	ENSG00000272779.1	308.46030	404.95940	-0.39270	2.58340	1.85890	K562	NSUN2
LL22NC03-80A10.6	ENSG00000272779.1	396.28010	201.77540	0.97370	7.67250	6.41530	K562	PRPF8
LL22NC03-80A10.6	ENSG00000272779.1	409.05420	316.83670	0.36850	2.10290	1.50970	K562	PTBP1
LL22NC03-80A10.6	ENSG00000272779.1	980.12350	424.34180	1.20760	13.63690	12.47680	K562	PUS1
LL22NC03-80A10.6	ENSG00000272779.1	588.49180	413.49930	0.50900	4.57400	3.83100	K562	RBM15
LL22NC03-80A10.6	ENSG00000272779.1	298.14740	399.62620	-0.42260	2.68100	1.87820	K562	SF3A3
LL22NC03-80A10.6	ENSG00000272779.1	422.55570	329.12450	0.36040	2.17030	1.41310	K562	SF3B4
LL22NC03-80A10.6	ENSG00000272779.1	204.53110	297.50910	-0.54060	2.61990	1.60150	K562	SRSF4
LL22NC03-80A10.6	ENSG00000272779.1	390.26370	289.74980	0.42950	2.53490	1.75110	K562	SYNCRIP
LL22NC03-80A10.6	ENSG00000272779.1	626.72700	306.82040	1.03030	10.52750	8.18810	K562	U2AF1
LL22NC03-80A10.6	ENSG00000272779.1	585.32290	316.85910	0.88530	11.01280	9.40190	K562	U2AF2
LL22NC03-80A10.6	ENSG00000272779.1	385.23660	523.79660	-0.44330	2.91430	2.02510	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

12 RBPs can affect the splicing of LL22NC03-80A10.6 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22658307	22658479	22661470	22661610	-0.05100	0.00215	0.03868	excluded	K562	SF3B4
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22658832	22659053			22658307	22658479	22661197	22661386	-0.07000	0.00149	0.05040	excluded	K562	PRPF8
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22658232	22658479	22661470	22661610	-0.14200	0.00000	0.00000	excluded	K562	AQR
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22658832	22659037			22658307	22658479	22661197	22661386	0.20100	0.00011	0.02286	included	K562	HNRNPM
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22658307	22658479	22661470	22661610	-0.06100	0.00034	0.05622	excluded	K562	SRSF7
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22658307	22658479	22661470	22661610	-0.07600	0.00106	0.03927	excluded	K562	TARDBP
A3SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661197	22661386	22658307	22658479	-0.17900	0.00026	0.01263	shorter	K562	U2AF2
A3SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661268			22661197	22661268	22658307	22658479	0.12000	0.00170	0.07883	longer	K562	SF3B4
A3SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661197	22661386	22658307	22658479	-0.26100	0.00022	0.01139	shorter	HepG2	U2AF1
A5SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661154	22661268	22661470	22661650	0.15400	0.00150	0.05320	longer	HepG2	U2AF2
A5SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661154	22661268	22661470	22661650	0.15000	0.00125	0.08680	longer	HepG2	RBM22
A5SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661168	22661386			22661168	22661268	22661470	22661650	-0.14900	0.00002	0.00232	shorter	K562	SRSF1
RI	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661361	22661610			22661361	22661386	22661470	22661610	0.13000	0.00000	0.00000	included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661197	22661386	22661470	22661610	22658232	22658479	22664100	22664248	-0.28800	0.00000	0.00000	2included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386	22661470	22661610	22658232	22658479	22664100	22664248	-0.12000	0.00000	0.00000	2included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661197	22661386	22661470	22661610	22658307	22658479	22664100	22664248	-0.32500	0.00021	0.00559	2included	K562	SF3B4
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661197	22661386	22661470	22661610	22658307	22658479	22664100	22664248	0.12700	0.00225	0.09638	1included	K562	HNRNPK
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386	22664100	22664248	22658307	22658479	22664590	22664766	0.14300	0.00000	0.00009	1included	K562	AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LL22NC03-80A10.6

General Information

Functions

Localization

Domains (AlphaFold: LL22NC03-80A10.6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

8 proteins are bound to LL22NC03-80A10.6 RNA:

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

43 RBPs can affect the gene expression of LL22NC03-80A10.6 :

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

12 RBPs can affect the splicing of LL22NC03-80A10.6 :

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.