LL22NC03-80A10.6

General Information

Gene Name : LL22NC03-80A10.6
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LL22NC03-80A10.6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Proteins bound to RNA

LL22NC03-80A10.6 RNA is bound by 8 proteins.

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eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

8 proteins are bound to LL22NC03-80A10.6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	22661343	22661423	+	intron-Distal,intron-Proximal	4.59745	11.83008	HepG2	PRPF8
chr22	22658305	22658381	+	intron-Proximal	5.33282	9.47372	K562	TRA2A
chr22	22661592	22661658	+	intron-Proximal	3.14974	8.91678	K562	UCHL5
chr22	22659559	22659601	+	intron-Distal	5.20318	8.04096	K562	EXOSC5
chr22	22658950	22659009	+	intron-Distal	5.47852	7.65271	K562	HNRNPM
chr22	22658951	22658996	+	intron-Distal	4.87309	6.73731	K562	EXOSC5
chr22	22664028	22664079	+	intron-Proximal	4.49905	6.28383	K562	KHSRP
chr22	22659513	22659559	+	intron-Distal	3.61821	6.13018	K562	EXOSC5
chr22	22660570	22660650	+	intron-Distal	4.02287	5.80937	K562	EXOSC5
chr22	22658307	22658325	+	intron-Proximal	4.11126	5.57819	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LL22NC03-80A10.6 is not available on ENCORE database.
43 RBPs can affect the levels of LL22NC03-80A10.6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

43 RBPs can affect the gene expression of LL22NC03-80A10.6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LL22NC03-80A10.6	ENSG00000272779.1	980.12350	424.34180	1.20760	13.63690	12.47680	K562	PUS1
LL22NC03-80A10.6	ENSG00000272779.1	585.32290	316.85910	0.88530	11.01280	9.40190	K562	U2AF2
LL22NC03-80A10.6	ENSG00000272779.1	626.72700	306.82040	1.03030	10.52750	8.18810	K562	U2AF1
LL22NC03-80A10.6	ENSG00000272779.1	396.28010	201.77540	0.97370	7.67250	6.41530	K562	PRPF8
LL22NC03-80A10.6	ENSG00000272779.1	185.51040	71.05310	1.38440	7.36680	6.34900	HepG2	U2AF1
LL22NC03-80A10.6	ENSG00000272779.1	179.86780	90.56550	0.98980	6.12980	5.39940	HepG2	ZNF622
LL22NC03-80A10.6	ENSG00000272779.1	185.90280	325.48000	-0.80800	6.24130	4.77460	K562	MATR3
LL22NC03-80A10.6	ENSG00000272779.1	125.89220	54.78920	1.20010	5.35940	4.19730	HepG2	EWSR1
LL22NC03-80A10.6	ENSG00000272779.1	588.49180	413.49930	0.50900	4.57400	3.83100	K562	RBM15
LL22NC03-80A10.6	ENSG00000272779.1	513.45920	309.95960	0.72810	5.55460	3.74560	K562	HNRNPK
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 46 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

12 RBPs can affect the splicing of LL22NC03-80A10.6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22658232	22658479	22661470	22661610	-0.14200	0.00000	0.00000	excluded	K562	AQR
RI	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661361	22661610			22661361	22661386	22661470	22661610	0.13000	0.00000	0.00000	included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661197	22661386	22661470	22661610	22658232	22658479	22664100	22664248	-0.28800	0.00000	0.00000	2included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386	22661470	22661610	22658232	22658479	22664100	22664248	-0.12000	0.00000	0.00000	2included	K562	AQR
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386	22664100	22664248	22658307	22658479	22664590	22664766	0.14300	0.00000	0.00009	1included	K562	AKAP8L
A5SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661168	22661386			22661168	22661268	22661470	22661650	-0.14900	0.00002	0.00232	shorter	K562	SRSF1
SE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22658832	22659037			22658307	22658479	22661197	22661386	0.20100	0.00011	0.02286	included	K562	HNRNPM
MXE	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661197	22661386	22661470	22661610	22658307	22658479	22664100	22664248	-0.32500	0.00021	0.00559	2included	K562	SF3B4
A3SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661197	22661386	22658307	22658479	-0.26100	0.00022	0.01139	shorter	HepG2	U2AF1
A3SS	LL22NC03-80A10.6	ENSG00000272779.1	chr22	+	22661154	22661386			22661197	22661386	22658307	22658479	-0.17900	0.00026	0.01263	shorter	K562	U2AF2

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LL22NC03-80A10.6

General Information

Functions

Localization

Domains (AlphaFold: LL22NC03-80A10.6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

8 proteins are bound to LL22NC03-80A10.6 RNA:

eCLIP assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

43 RBPs can affect the gene expression of LL22NC03-80A10.6 :

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not available on ENCORE database.

12 RBPs can affect the splicing of LL22NC03-80A10.6 :

The Knockdown/knockout RNA-Seq assay for LL22NC03-80A10.6 is not avaliable on ENCORE database.