FOXA3

General Information

Gene Name       : FOXA3
Gene ID             : ENSG00000170608.2
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: FOXA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FOXA3ENSG00000170608.20.000.010.01ENCSR000AEF
HepG2FOXA3ENSG00000170608.219.7012.6416.17ENCSR985KAT
K562FOXA3ENSG00000170608.24.393.163.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FOXA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FOXA3 RNA is bound by 12 proteins.  







eCLIP assay for FOXA3 is not avaliable on ENCORE database.





12 proteins are bound to FOXA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194637675946376904+3'-UTR4.471855.31599HepG2AKAP1
chr194637523946375366+3'-UTR,CDS,intron-Proximal3.644096.57821HepG2AQR
chr194637669046376850+3'-UTR4.518784.20997HepG2UPF1
chr194637631946376374+3'-UTR4.366354.68055HepG2CSTF2T
chr194636759546367656+5'-UTR,intron-Distal3.229234.75864HepG2DDX3X
chr194636767846367760+5'-UTR,CDS,intron-Distal3.655643.94360HepG2GTF2F1
chr194636758146367679+5'-UTR,intron-Distal3.559109.84906HepG2NCBP2
chr194636768446367739+5'-UTR,CDS,intron-Distal4.488975.20041HepG2PRPF4
chr194636765646367767+5'-UTR,CDS,intron-Distal4.2351511.34202HepG2DDX3X
chr194636773946367872+CDS,intron-Distal,intron-Proximal3.466369.77802HepG2PRPF4
chr194636777946367868+CDS,intron-Distal,intron-Proximal3.956244.70265HepG2AQR
chr194637621546376285+CDS5.031566.52076HepG2RBM15
chr194637610646376144+CDS4.626533.80461HepG2RBM15
chr194636780346367873+intron-Distal,intron-Proximal3.586247.20817HepG2FAM120A
chr194636905046369103+intron-Distal3.962933.58513HepG2GTF2F1
chr194636884146368920+intron-Distal3.011624.35338HepG2HNRNPU
chr194636861046368659+intron-Distal4.408795.36332HepG2CSTF2T
chr194636906246369108+intron-Distal4.252114.86859HepG2CSTF2T
chr194636883046368918+intron-Distal3.140454.00174HepG2PRPF4
chr194636883546368888+intron-Distal3.031354.74807HepG2CSTF2T
chr194636902546369093+intron-Distal3.468246.05701HepG2FAM120A
chr194636901246369119+intron-Distal3.6565712.89066HepG2RBFOX2
chr194636903246369090+intron-Distal3.361344.55636HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FOXA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FOXA3 is not available on ENCORE database.

  • 58 RBPs can affect the levels of FOXA3.  








The Knockdown/knockout RNA-Seq assay for FOXA3 is not available on ENCORE database.





58 RBPs can affect the gene expression of FOXA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FOXA3ENSG00000170608.21159.12080762.311100.604505.545004.45310HepG2ASCC1
FOXA3ENSG00000170608.21156.84610917.055400.335003.566102.80350HepG2AUH
FOXA3ENSG00000170608.2905.61900434.801201.0584015.3146014.06550HepG2BOP1
FOXA3ENSG00000170608.2597.82040399.153600.582704.301403.46160HepG2CPSF6
FOXA3ENSG00000170608.2948.35670652.480900.539405.305803.81290HepG2CPSF7
FOXA3ENSG00000170608.2884.46580661.288000.419404.834704.02890HepG2CELF1
FOXA3ENSG00000170608.2557.20690414.059600.428303.200001.95850HepG2DDX1
FOXA3ENSG00000170608.2292.66900414.63240-0.502602.014601.42490HepG2DDX21
FOXA3ENSG00000170608.2824.62460453.274100.863304.324103.11740HepG2DDX59
FOXA3ENSG00000170608.22052.75620758.271701.4367026.0452024.43660HepG2DDX6
FOXA3ENSG00000170608.2574.40150406.006500.500502.514101.83960HepG2DNAJC21
FOXA3ENSG00000170608.2603.06060382.282300.657604.400802.99100HepG2AGO1
FOXA3ENSG00000170608.21054.38850805.299500.388702.221901.64740HepG2EIF4A3
FOXA3ENSG00000170608.2432.49040784.22920-0.858606.499305.47620HepG2EIF4B
FOXA3ENSG00000170608.2912.27740701.472400.379004.367003.35840HepG2EIF4G1
FOXA3ENSG00000170608.2602.23930800.05870-0.409802.137001.45660HepG2FIP1L1
FOXA3ENSG00000170608.2271.23120545.68870-1.0086011.450009.89750HepG2FUBP3
FOXA3ENSG00000170608.2562.94410800.45360-0.507803.746902.69980HepG2G3BP2
FOXA3ENSG00000170608.2613.04200379.844400.690504.917403.55830HepG2GNB2L1
FOXA3ENSG00000170608.2809.03840537.397700.590108.295506.71400HepG2HDGF
FOXA3ENSG00000170608.2770.89560517.037200.576206.688005.63790HepG2HNRNPF
FOXA3ENSG00000170608.2363.19670452.92320-0.318502.047401.51670HepG2HNRNPU
FOXA3ENSG00000170608.2741.46850509.126400.542304.860503.92650HepG2IGF2BP1
FOXA3ENSG00000170608.2347.32480719.23380-1.050203.890402.72500HepG2IGF2BP3
FOXA3ENSG00000170608.2577.71310817.55740-0.501003.223002.54610HepG2MATR3
FOXA3ENSG00000170608.2396.12640647.49530-0.708906.914905.69400HepG2MSI2
FOXA3ENSG00000170608.2392.93350543.70900-0.468503.220101.90710HepG2NAA15
FOXA3ENSG00000170608.2331.96340836.78260-1.3338018.3794016.84470HepG2NCBP2
FOXA3ENSG00000170608.2964.99300745.058100.373102.283401.62280HepG2PABPC4
FOXA3ENSG00000170608.2960.86860800.379600.263602.222801.66770HepG2PCBP1
FOXA3ENSG00000170608.2919.89950743.484400.307102.145201.37750HepG2RBM15
FOXA3ENSG00000170608.2583.49960880.08180-0.592907.601906.84200HepG2RBM22
FOXA3ENSG00000170608.2706.51460844.13600-0.256801.992401.45720HepG2RECQL
FOXA3ENSG00000170608.2721.38690557.090100.372802.158101.54560HepG2RPLP0
FOXA3ENSG00000170608.2243.68830356.25720-0.547902.951802.14270HepG2RRP9
FOXA3ENSG00000170608.2551.22380427.329700.367201.943101.34510HepG2SF3B1
FOXA3ENSG00000170608.2672.97870847.92150-0.333402.957502.35010HepG2SF3B4
FOXA3ENSG00000170608.2670.60020475.489200.495902.212501.51780HepG2SNRNP70
FOXA3ENSG00000170608.2833.41050993.99050-0.254202.365901.89100HepG2SRFBP1
FOXA3ENSG00000170608.2576.41050885.03750-0.618608.663607.93270HepG2SRSF1
FOXA3ENSG00000170608.2892.95350507.998400.8137013.6799012.33440HepG2SRSF7
FOXA3ENSG00000170608.2902.20130720.017500.325303.224402.63790HepG2SRSF9
FOXA3ENSG00000170608.21156.48630862.967400.422305.509704.83440HepG2SSB
FOXA3ENSG00000170608.2450.33560795.48150-0.8208012.0738011.03040HepG2TAF15
FOXA3ENSG00000170608.2593.17680730.96540-0.301302.068701.34270HepG2TIA1
FOXA3ENSG00000170608.2578.22620440.084300.393802.724002.22660HepG2TIAL1
FOXA3ENSG00000170608.2511.42710617.71080-0.272402.099601.60460HepG2ZNF622
FOXA3ENSG00000170608.2156.34960230.09530-0.557502.231201.69500K562AQR
FOXA3ENSG00000170608.2430.03440201.867701.0909013.7589012.41550K562DDX47
FOXA3ENSG00000170608.2172.30770100.545000.777002.324001.41050K562EIF3A
FOXA3ENSG00000170608.2322.77660225.746300.515702.448901.73610K562GRSF1
FOXA3ENSG00000170608.2361.02000201.573700.840706.039404.87730K562HSPD1
FOXA3ENSG00000170608.2151.9151092.548500.714902.974902.01380K562MATR3
FOXA3ENSG00000170608.2257.26130168.815400.607703.157402.27270K562PPIG
FOXA3ENSG00000170608.2178.6335090.105300.987205.735304.80740K562PTBP1
FOXA3ENSG00000170608.259.77770120.17500-1.007503.281102.69750K562PUS1
FOXA3ENSG00000170608.2242.53130110.555201.133304.588003.53300K562RPS19
FOXA3ENSG00000170608.2167.4086088.336100.922204.258803.38870K562SRSF1
FOXA3ENSG00000170608.292.80470180.54030-0.960105.334904.37210K562UPF1
FOXA3ENSG00000170608.2220.57530160.660300.457202.253901.48300K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FOXA3 is not available on ENCORE database.





1 RBPs can affect the splicing of FOXA3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFOXA3ENSG00000170608.2chr19+463753324637553546367517463677834637565646375667-0.130000.001990.04394excludedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FOXA3 is not avaliable on ENCORE database.