CCDC28A

General Information

Gene Name       : CCDC28A
Gene ID             : ENSG00000024862.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC28A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC28AENSG00000024862.1713.0012.8212.91ENCSR000AEF
HepG2CCDC28AENSG00000024862.177.0111.009.00ENCSR985KAT
K562CCDC28AENSG00000024862.1715.0212.0913.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC28A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC28A RNA is bound by 1 proteins.  







eCLIP assay for CCDC28A is not avaliable on ENCORE database.





1 proteins are bound to CCDC28A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6139094937139095041+CDS,intron-Proximal5.446176.69401K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC28A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC28A is not available on ENCORE database.

  • 56 RBPs can affect the levels of CCDC28A.  








The Knockdown/knockout RNA-Seq assay for CCDC28A is not available on ENCORE database.





56 RBPs can affect the gene expression of CCDC28A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC28AENSG00000024862.12584.15900238.143801.2944012.7508011.69580HepG2AKAP1
CCDC28AENSG00000024862.12381.76650187.213701.027908.201106.92810HepG2CIRBP
CCDC28AENSG00000024862.12263.93720191.025100.466302.547801.90470HepG2CKAP4
CCDC28AENSG00000024862.12154.07660325.06740-1.077108.195407.20000HepG2CELF1
CCDC28AENSG00000024862.12548.15580228.152201.2645013.5910012.30690HepG2DDX3X
CCDC28AENSG00000024862.12291.36210195.920500.572402.468501.88280HepG2DDX6
CCDC28AENSG00000024862.1268.48350168.42900-1.298307.092305.31860HepG2EFTUD2
CCDC28AENSG00000024862.12371.66340208.246900.835605.412804.51980HepG2EIF4A3
CCDC28AENSG00000024862.12272.25090186.709000.544002.781601.94440HepG2EWSR1
CCDC28AENSG00000024862.12179.82050101.648800.822903.501402.62060HepG2FUBP3
CCDC28AENSG00000024862.12290.06520210.015100.465801.951201.36600HepG2FXR1
CCDC28AENSG00000024862.12269.23250183.401300.553702.444201.78950HepG2HNRNPC
CCDC28AENSG00000024862.12138.49400318.45690-1.201308.617407.49240HepG2HNRNPL
CCDC28AENSG00000024862.12200.84610331.11720-0.721302.641001.83000HepG2LARP4
CCDC28AENSG00000024862.12340.06870219.858200.629203.979502.52560HepG2LIN28B
CCDC28AENSG00000024862.12292.43810210.088000.477002.030901.46500HepG2MAGOH
CCDC28AENSG00000024862.12297.22830211.279700.492301.989601.45000HepG2MATR3
CCDC28AENSG00000024862.12200.01780346.64020-0.793306.686505.50790HepG2NOL12
CCDC28AENSG00000024862.12250.40550184.946400.437102.050701.51570HepG2PCBP1
CCDC28AENSG00000024862.12278.87450188.183400.567403.186302.60740HepG2PTBP1
CCDC28AENSG00000024862.12257.91820194.640100.406001.982101.44150HepG2PUS1
CCDC28AENSG00000024862.12308.73530184.975500.738904.707203.84760HepG2RBM25
CCDC28AENSG00000024862.12140.45900252.38890-0.845504.202202.96230HepG2RBM27
CCDC28AENSG00000024862.12282.06470209.435500.429401.880101.41510HepG2NELFE
CCDC28AENSG00000024862.12276.76680195.050800.504702.556501.96040HepG2RECQL
CCDC28AENSG00000024862.12228.46280155.441200.555502.323901.59660HepG2RRP9
CCDC28AENSG00000024862.12309.34640165.139100.905404.190803.22200HepG2SNRNP70
CCDC28AENSG00000024862.12724.02420367.003700.9801016.6641015.70700HepG2SRFBP1
CCDC28AENSG00000024862.12345.60610204.508800.756905.632305.01730HepG2SRSF1
CCDC28AENSG00000024862.12242.78600318.64430-0.392302.099901.63720HepG2SSB
CCDC28AENSG00000024862.1271.13220202.67950-1.510607.743006.70450HepG2SUPV3L1
CCDC28AENSG00000024862.12378.39240183.807201.0416010.733609.74470HepG2TAF15
CCDC28AENSG00000024862.1291.93000146.16700-0.669002.236701.57510HepG2TARDBP
CCDC28AENSG00000024862.12111.14960178.61240-0.684303.445102.83120HepG2TRIM56
CCDC28AENSG00000024862.12317.01610199.307700.669503.516702.81310HepG2U2AF1
CCDC28AENSG00000024862.12239.77380342.11670-0.512802.165001.43000HepG2UBE2L3
CCDC28AENSG00000024862.12936.54640645.433700.537007.253406.39780K562AGGF1
CCDC28AENSG00000024862.12941.15060709.251400.408003.380602.27050K562AKAP8
CCDC28AENSG00000024862.12390.52940518.08970-0.407802.681501.45980K562APOBEC3C
CCDC28AENSG00000024862.12660.99550519.106000.348502.027901.51000K562AQR
CCDC28AENSG00000024862.12864.33910704.685800.294502.415701.56690K562ATP5C1
CCDC28AENSG00000024862.12208.77810348.39350-0.738706.058804.89580K562EIF3G
CCDC28AENSG00000024862.12258.63920355.01000-0.456902.449301.67670K562EIF4A3
CCDC28AENSG00000024862.12449.28680251.269300.838305.203604.01650K562FIP1L1
CCDC28AENSG00000024862.12217.79710369.19560-0.761406.348805.48740K562FXR1
CCDC28AENSG00000024862.12798.29050432.942900.882604.267002.64780K562HNRNPA2B1
CCDC28AENSG00000024862.12210.23960338.61980-0.687602.932801.31500K562HNRNPAB
CCDC28AENSG00000024862.12575.79550340.674200.757106.514005.30780K562HSPD1
CCDC28AENSG00000024862.12972.26690712.728200.447903.867902.86920K562KIF1C
CCDC28AENSG00000024862.12324.57110506.00710-0.640605.599904.39240K562MAGOH
CCDC28AENSG00000024862.12871.63310682.268400.353302.594001.56450K562MAK16
CCDC28AENSG00000024862.12810.77700559.648300.534703.260002.28870K562NAA15
CCDC28AENSG00000024862.12743.46720378.644500.973304.952103.51940K562PABPN1
CCDC28AENSG00000024862.12439.95040297.665700.563503.208502.31300K562PCBP3
CCDC28AENSG00000024862.12320.15820228.327800.487602.682801.89600K562POLR2G
CCDC28AENSG00000024862.12386.72570285.233900.439102.348101.59400K562PPIG
CCDC28AENSG00000024862.12194.79690491.60360-1.3355019.4091017.72690K562PTBP1
CCDC28AENSG00000024862.121038.13870666.019600.640306.230505.45510K562PUS1
CCDC28AENSG00000024862.12884.54960648.961100.446704.572003.82940K562RBM15
CCDC28AENSG00000024862.12497.81300354.628900.489203.270001.81370K562RBM25
CCDC28AENSG00000024862.12876.70240475.669700.882003.926002.10730K562SUPT6H
CCDC28AENSG00000024862.1288.42010189.86320-1.102505.557304.08130K562SUPV3L1
CCDC28AENSG00000024862.12368.61890487.77410-0.404102.268201.62360K562TARDBP
CCDC28AENSG00000024862.12827.39310467.986500.822003.525101.65090K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC28A is not available on ENCORE database.






No RBPs affect the alternative splcing events of CCDC28A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CCDC28A is not avaliable on ENCORE database.