SOX2-OT

General Information

Gene Name       : SOX2-OT
Gene ID             : ENSG00000242808.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOX2-OT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOX2-OTENSG00000242808.80.000.170.09ENCSR000AEF
HepG2SOX2-OTENSG00000242808.80.000.040.02ENCSR985KAT
K562SOX2-OTENSG00000242808.80.030.010.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOX2-OT is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOX2-OT RNA is bound by 6 proteins.  







eCLIP assay for SOX2-OT is not avaliable on ENCORE database.





6 proteins are bound to SOX2-OT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3180949569180949594+intron-Distal3.9989818.16198K562QKI
chr3180949594180949599+intron-Distal4.4375621.73436K562QKI
chr3180949611180949620+intron-Distal4.0303328.66890K562PRPF8
chr3180949599180949607+intron-Distal3.9993111.81807K562QKI
chr3180949566180949627+intron-Distal3.032268.51761HepG2PRPF8
chr3180949566180949625+intron-Distal3.5355539.64599K562XRN2
chr3180949620180949634+intron-Distal6.2926017.98611K562PRPF8
chr3180949603180949625+intron-Distal4.4167215.12788HepG2SMNDC1
chr3180949581180949629+intron-Distal3.1211113.14353K562GPKOW
chr3180949527180949539+intron-Distal4.601286.22488K562QKI
chr3180949625180949632+intron-Distal4.297976.88977HepG2SMNDC1
chr3180949556180949611+intron-Distal4.3556640.17517K562PRPF8
chr3180949572180949581+intron-Distal5.2171339.35972K562RBM22
chr3180949523180949527+intron-Distal4.861256.68846K562QKI
chr3180949606180949623+intron-Distal6.6517749.42706K562RBM22
chr3180949581180949606+intron-Distal5.5813551.92507K562RBM22
chr3180949559180949567+intron-Distal4.5453319.50179K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOX2-OT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOX2-OT is not available on ENCORE database.

  • No RBPs affect the gene expression of SOX2-OT on ENCORE database.


The Knockdown/knockout RNA-Seq assay for SOX2-OT is not available on ENCORE database.






No RBPs affect the gene expression of SOX2-OT on ENCORE database.






The Knockdown/knockout RNA-Seq assay for SOX2-OT is not available on ENCORE database.






No RBPs affect the alternative splcing events of SOX2-OT on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SOX2-OT is not avaliable on ENCORE database.