HIST1H4D

General Information

Gene Name       : HIST1H4D
Gene ID             : ENSG00000277157.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HIST1H4D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HIST1H4DENSG00000277157.10.001.590.80ENCSR000AEF
HepG2HIST1H4DENSG00000277157.10.940.330.64ENCSR985KAT
K562HIST1H4DENSG00000277157.10.002.771.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HIST1H4D is not avaliable on ENCORE database.



Proteins bound to RNA
  • HIST1H4D RNA is bound by 7 proteins.  







eCLIP assay for HIST1H4D is not avaliable on ENCORE database.





7 proteins are bound to HIST1H4D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62618895126188980-3'-UTR5.7108511.17444HepG2RPS3
chr62618896826188992-3'-UTR3.1616816.14988K562YBX3
chr62618895226188974-3'-UTR4.3550727.59416K562RPS3
chr62618894926188977-3'-UTR6.0707120.13880HepG2SUB1
chr62618893926188989-3'-UTR9.74172400.00000K562SLBP
chr62618898926189009-3'-UTR,CDS8.00499142.84471K562SLBP
chr62618906126189093-CDS3.6271919.48545K562YBX3
chr62618922926189239-CDS5.6239846.57478K562ZRANB2
chr62618919826189218-CDS3.4239024.47417K562DDX3X
chr62618904826189094-CDS3.545875.05864HepG2YBX3
chr62618918126189221-CDS4.7858513.71139HepG2RPS3
chr62618905226189061-CDS3.4992414.51364K562YBX3
chr62618918726189205-CDS5.4128132.58157K562RPS3
chr62618916826189212-CDS3.6354710.74528K562SND1
chr62618923926189291-CDS4.7815162.72246K562ZRANB2
chr62618925126189295-CDS3.4443655.66696K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HIST1H4D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HIST1H4D is not available on ENCORE database.

  • 2 RBPs can affect the levels of HIST1H4D.  








The Knockdown/knockout RNA-Seq assay for HIST1H4D is not available on ENCORE database.





2 RBPs can affect the gene expression of HIST1H4D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HIST1H4DENSG00000188987.224.314105.550902.130902.494901.51860K562EIF3D
HIST1H4DENSG00000188987.226.094308.799701.568101.844101.34530K562HNRNPC
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HIST1H4D is not available on ENCORE database.






No RBPs affect the alternative splcing events of HIST1H4D on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HIST1H4D is not avaliable on ENCORE database.