CTD-3203P2.2

General Information

Gene Name       : CTD-3203P2.2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-3203P2.2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-3203P2.2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-3203P2.2 RNA is bound by 1 proteins.  







eCLIP assay for CTD-3203P2.2 is not avaliable on ENCORE database.





1 proteins are bound to CTD-3203P2.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162728622627286284+intron-Distal3.582053.30829HepG2CSTF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-3203P2.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-3203P2.2 is not available on ENCORE database.

  • 5 RBPs can affect the levels of CTD-3203P2.2.  








The Knockdown/knockout RNA-Seq assay for CTD-3203P2.2 is not available on ENCORE database.





5 RBPs can affect the gene expression of CTD-3203P2.2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-3203P2.2ENSG00000245888.249.0449014.780001.730403.763101.42150HepG2EXOSC5
CTD-3203P2.2ENSG00000245888.238.7075011.004301.814403.351001.43350HepG2EXOSC9
CTD-3203P2.2ENSG00000245888.24.0933030.48830-2.896904.488603.87090HepG2RBM22
CTD-3203P2.2ENSG00000245888.241.3361016.815301.297502.244201.73050HepG2TAF15
CTD-3203P2.2ENSG00000245888.22.7109024.57690-3.180403.455302.85860K562PUS1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-3203P2.2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-3203P2.2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-3203P2.2 is not avaliable on ENCORE database.