CHST13

General Information

Gene Name : CHST13
Gene ID : ENSG00000180767.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHST13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHST13	ENSG00000180767.9	0.00	0.00	0.00	ENCSR000AEF
HepG2	CHST13	ENSG00000180767.9	22.23	1.86	12.04	ENCSR985KAT
K562	CHST13	ENSG00000180767.9	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHST13 is not avaliable on ENCORE database.

Proteins bound to RNA

CHST13 RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for CHST13 is not avaliable on ENCORE database.

24 proteins are bound to CHST13 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	126258198	126258292	+	intron-Distal	6.15845	54.73134	HepG2	AGGF1
chr3	126258738	126258795	+	intron-Distal	6.56517	48.38633	HepG2	AGGF1
chr3	126243140	126243174	+	5'-UTR	5.48123	47.84728	HepG2	DDX3X
chr3	126243195	126243237	+	CDS	4.30675	46.55321	HepG2	DDX3X
chr3	126258903	126259012	+	intron-Distal	6.90932	43.21324	HepG2	XPO5
chr3	126261504	126261590	+	3'-UTR	5.74755	41.30822	HepG2	UPF1
chr3	126243237	126243274	+	CDS,intron-Proximal	4.01968	39.78792	HepG2	DDX3X
chr3	126255679	126255768	+	intron-Distal	5.19439	38.37975	HepG2	HNRNPL
chr3	126243174	126243195	+	5'-UTR,CDS	4.73282	36.24463	HepG2	DDX3X
chr3	126258795	126258840	+	intron-Distal	6.13489	35.74086	HepG2	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 103 entries

eCLIP assay for CHST13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHST13 is not available on ENCORE database.
71 RBPs can affect the levels of CHST13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.

71 RBPs can affect the gene expression of CHST13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHST13	ENSG00000180767.5	98.68000	518.71230	-2.39410	47.62590	45.67110	HepG2	TAF15
CHST13	ENSG00000180767.5	644.69990	204.13350	1.65900	29.14090	27.48040	HepG2	PUF60
CHST13	ENSG00000180767.5	626.46620	195.73610	1.67820	28.60310	26.81840	HepG2	SLBP
CHST13	ENSG00000180767.5	154.94010	469.46090	-1.59930	27.80120	26.39760	HepG2	SRSF9
CHST13	ENSG00000180767.5	177.01210	609.90880	-1.78470	25.04550	22.79880	HepG2	FUBP3
CHST13	ENSG00000180767.5	403.62490	99.73410	2.01680	24.41910	22.40480	HepG2	PPIL4
CHST13	ENSG00000180767.5	266.70970	577.02830	-1.11340	16.03440	15.09580	HepG2	SRSF1
CHST13	ENSG00000180767.5	1270.14300	649.58430	0.96730	15.69430	14.36110	HepG2	DKC1
CHST13	ENSG00000180767.5	406.37000	118.23230	1.78110	13.90590	12.17110	HepG2	RPS3A
CHST13	ENSG00000180767.5	449.75370	136.98230	1.71500	14.28720	11.97980	HepG2	RCC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 71 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.

1 RBPs can affect the splicing of CHST13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	CHST13	ENSG00000180767.5	chr3	+	126260008	126260109			126255113	126255196	126260575	126262134	0.24000	0.00001	0.00066	included	HepG2	SF3A3

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHST13

General Information

Functions

Localization

Domains (AlphaFold: CHST13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHST13 is not avaliable on ENCORE database.

24 proteins are bound to CHST13 RNA:

eCLIP assay for CHST13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.

71 RBPs can affect the gene expression of CHST13 :

The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.

1 RBPs can affect the splicing of CHST13 :

The Knockdown/knockout RNA-Seq assay for CHST13 is not avaliable on ENCORE database.