TMEM161B

General Information

Gene Name : TMEM161B
Gene ID : ENSG00000164180.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM161B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM161B	ENSG00000164180.13	20.35	19.10	19.73	ENCSR000AEF
HepG2	TMEM161B	ENSG00000164180.13	4.63	11.50	8.06	ENCSR985KAT
K562	TMEM161B	ENSG00000164180.13	24.04	24.72	24.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM161B is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM161B RNA is bound by 20 proteins.

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eCLIP assay for TMEM161B is not avaliable on ENCORE database.

20 proteins are bound to TMEM161B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	87498151	87498249	-	3'-UTR,intron-Distal	4.30394	27.89517	K562	QKI
chr5	87498714	87498801	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68468	12.23779	K562	KHSRP
chr5	87501535	87501622	-	3'-UTR,intron-Distal,intron-Proximal	5.43900	10.72437	K562	KHSRP
chr5	87494973	87495063	-	3'-UTR,intron-Distal,intron-Proximal	3.65372	10.29051	K562	KHSRP
chr5	87498641	87498712	-	3'-UTR,intron-Distal,intron-Proximal	3.62809	10.28985	K562	KHSRP
chr5	87498582	87498641	-	3'-UTR,intron-Distal	3.48021	9.66830	K562	KHSRP
chr5	87498087	87498151	-	3'-UTR,intron-Distal	3.61490	9.35848	K562	QKI
chr5	87552091	87552158	-	intron-Distal	5.00523	8.81516	K562	KHSRP
chr5	87564530	87564642	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.99567	8.37300	HepG2	NCBP2
chr5	87516457	87516543	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79107	8.25092	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 66 entries

eCLIP assay for TMEM161B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM161B is not available on ENCORE database.
101 RBPs can affect the levels of TMEM161B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM161B is not available on ENCORE database.

101 RBPs can affect the gene expression of TMEM161B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM161B	ENSG00000164180.9	387.58370	874.10780	-1.17330	25.68190	24.56060	HepG2	SRSF1
TMEM161B	ENSG00000164180.9	1047.99580	2100.90760	-1.00340	22.97860	20.93060	K562	SRSF1
TMEM161B	ENSG00000164180.9	2061.95230	3924.74840	-0.92860	20.47990	18.17150	K562	PUF60
TMEM161B	ENSG00000164180.9	414.35880	949.16260	-1.19580	14.84160	13.46510	HepG2	MATR3
TMEM161B	ENSG00000164180.9	4251.40000	2390.53540	0.83050	14.66380	13.45200	K562	PUS1
TMEM161B	ENSG00000164180.9	1063.91910	1711.98920	-0.68630	14.33340	12.89020	K562	EIF2S2
TMEM161B	ENSG00000164180.9	333.26870	609.09900	-0.87000	13.42530	12.29790	HepG2	ACO1
TMEM161B	ENSG00000164180.9	1064.43310	1689.48770	-0.66650	13.47190	12.23900	K562	FXR1
TMEM161B	ENSG00000164180.9	526.23090	895.16710	-0.76650	12.12810	11.14750	HepG2	NELFE
TMEM161B	ENSG00000164180.9	353.62830	611.90950	-0.79110	11.97130	10.77890	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM161B is not available on ENCORE database.

14 RBPs can affect the splicing of TMEM161B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TMEM161B	ENSG00000164180.9	chr5	-	87536629	87536733			87524261	87524345	87564537	87564616	-0.14700	0.00000	0.00032	excluded	K562	EIF4G2
A3SS	TMEM161B	ENSG00000164180.9	chr5	-	87501630	87501838			87501630	87501771	87502255	87502316	0.08300	0.00000	0.00000	longer	K562	AQR
MXE	TMEM161B	ENSG00000164180.9	chr5	-	87524261	87524345	87536629	87536733	87516379	87516536	87564537	87564665	-0.18900	0.00000	0.00218	2included	K562	EIF4G2
MXE	TMEM161B	ENSG00000164180.9	chr5	-	87524261	87524345	87536629	87536733	87502845	87502997	87564537	87564665	-0.19400	0.00000	0.00025	2included	K562	EIF4G2
SE	TMEM161B	ENSG00000164180.9	chr5	-	87521585	87521683			87516379	87516536	87524261	87524345	-0.29200	0.00001	0.00036	excluded	K562	SF3B4
SE	TMEM161B	ENSG00000164180.9	chr5	-	87501630	87501771			87498778	87498892	87502255	87502316	-0.08200	0.00001	0.00031	excluded	K562	AQR
SE	TMEM161B	ENSG00000164180.9	chr5	-	87517117	87517288			87516431	87516536	87521585	87521683	0.13100	0.00002	0.00943	included	K562	WDR3
SE	TMEM161B	ENSG00000164180.9	chr5	-	87536629	87536733			87524261	87524345	87564537	87564616	-0.15700	0.00002	0.00169	excluded	K562	HNRNPU
SE	TMEM161B	ENSG00000164180.9	chr5	-	87536629	87536733			87524261	87524345	87564537	87564616	0.18300	0.00004	0.00613	included	HepG2	DDX3X
SE	TMEM161B	ENSG00000164180.9	chr5	-	87536629	87536733			87524261	87524345	87564537	87564616	-0.22000	0.00005	0.00153	excluded	K562	U2AF2

Showing 1 to 10 of 35 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM161B

General Information

Functions

Localization

Domains (AlphaFold: TMEM161B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM161B is not avaliable on ENCORE database.

20 proteins are bound to TMEM161B RNA:

eCLIP assay for TMEM161B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM161B is not available on ENCORE database.

101 RBPs can affect the gene expression of TMEM161B :

The Knockdown/knockout RNA-Seq assay for TMEM161B is not available on ENCORE database.

14 RBPs can affect the splicing of TMEM161B :

The Knockdown/knockout RNA-Seq assay for TMEM161B is not avaliable on ENCORE database.