TAMM41

General Information

Gene Name : TAMM41
Gene ID : ENSG00000144559.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TAMM41)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TAMM41	ENSG00000144559.10	12.45	10.51	11.48	ENCSR000AEF
HepG2	TAMM41	ENSG00000144559.10	9.48	13.71	11.60	ENCSR985KAT
K562	TAMM41	ENSG00000144559.10	23.44	21.05	22.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Proteins bound to RNA

TAMM41 RNA is bound by 20 proteins.

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eCLIP assay for TAMM41 is not avaliable on ENCORE database.

20 proteins are bound to TAMM41 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	11888088	11888223	-	5'-UTR,CDS,intron-Distal	4.06330	10.51255	K562	PCBP1
chr3	11849314	11849401	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.14942	10.00445	HepG2	U2AF2
chr3	11888116	11888251	-	5'-UTR,intron-Distal,intron-Proximal	3.42138	9.15475	HepG2	PCBP2
chr3	11849251	11849352	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.47619	8.72621	HepG2	PRPF8
chr3	11850984	11851078	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.54232	8.19964	HepG2	BCLAF1
chr3	11832016	11832071	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06982	7.27507	HepG2	U2AF2
chr3	11887972	11888079	-	CDS,intron-Distal	3.66214	7.26626	HepG2	PPIG
chr3	11888085	11888196	-	5'-UTR,CDS,intron-Distal	3.09415	6.07287	K562	HNRNPK
chr3	11832797	11832863	-	intron-Distal	4.02859	6.02363	HepG2	U2AF2
chr3	11847881	11848010	-	intron-Distal	4.98337	5.81225	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 45 entries

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TAMM41 is not available on ENCORE database.
28 RBPs can affect the levels of TAMM41.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

28 RBPs can affect the gene expression of TAMM41 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TAMM41	ENSG00000144559.6	394.76650	202.98410	0.95950	7.08710	6.09120	HepG2	U2AF1
TAMM41	ENSG00000144559.6	773.82200	513.74480	0.59080	6.80060	5.39610	K562	HNRNPU
TAMM41	ENSG00000144559.6	266.53820	434.13710	-0.70380	5.74160	4.61890	K562	CPSF6
TAMM41	ENSG00000144559.6	611.75440	433.33290	0.49740	4.64140	3.93980	K562	AGGF1
TAMM41	ENSG00000144559.6	281.79620	175.24390	0.68520	4.26870	3.55870	HepG2	SF3B4
TAMM41	ENSG00000144559.6	390.02510	565.87030	-0.53690	4.28700	2.94100	K562	HNRNPL
TAMM41	ENSG00000144559.6	329.93780	453.90260	-0.46020	3.43860	2.65030	K562	EIF2S2
TAMM41	ENSG00000144559.6	447.17420	291.57980	0.61680	3.43440	2.52180	K562	RPS19
TAMM41	ENSG00000144559.6	209.25180	373.21560	-0.83480	3.56350	2.50230	K562	MATR3
TAMM41	ENSG00000144559.6	274.25070	393.22050	-0.51980	3.11590	2.48740	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

9 RBPs can affect the splicing of TAMM41 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625	11871187	11871338	11880695	11880788	0.24100	0.00000	0.00013	included	K562	MATR3
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570	11885502	11885685	11887975	11888359	0.28200	0.00000	0.00009	included	K562	CPSF6
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625	11871187	11871338	11880695	11880788	0.15700	0.00003	0.00256	included	K562	PTBP1
A3SS	TAMM41	ENSG00000144559.6	chr3	-	11850990	11851232	11850990	11851156	11858665	11858811	0.08000	0.00003	0.00025	longer	K562	AQR
SE	TAMM41	ENSG00000144559.6	chr3	-	11868191	11868279	11858561	11858811	11871187	11871384	-0.17400	0.00004	0.00221	excluded	HepG2	SF3A3
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625	11871187	11871338	11880695	11880788	0.19100	0.00039	0.02079	included	HepG2	MATR3
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625	11871187	11871338	11880695	11880788	0.42600	0.00122	0.05219	included	HepG2	SFPQ
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570	11885502	11885685	11887975	11888359	0.20400	0.00138	0.08058	included	K562	HNRNPL
SE	TAMM41	ENSG00000144559.6	chr3	-	11868191	11868279	11858561	11858811	11871187	11871384	0.10800	0.00298	0.04651	included	K562	HNRNPC
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570	11885502	11885685	11887975	11888359	0.21300	0.00650	0.08513	included	K562	HNRNPC

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TAMM41

General Information

Functions

Localization

Domains (AlphaFold: TAMM41)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

20 proteins are bound to TAMM41 RNA:

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

28 RBPs can affect the gene expression of TAMM41 :

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

9 RBPs can affect the splicing of TAMM41 :

The Knockdown/knockout RNA-Seq assay for TAMM41 is not avaliable on ENCORE database.