RBX1

General Information

Gene Name : RBX1
Gene ID : ENSG00000100387.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBX1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBX1	ENSG00000100387.8	69.52	74.58	72.05	ENCSR000AEF
HepG2	RBX1	ENSG00000100387.8	53.56	70.75	62.16	ENCSR985KAT
K562	RBX1	ENSG00000100387.8	53.58	45.68	49.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBX1 is not avaliable on ENCORE database.

Proteins bound to RNA

RBX1 RNA is bound by 22 proteins.

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eCLIP assay for RBX1 is not avaliable on ENCORE database.

22 proteins are bound to RBX1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	41368589	41368655	+	3'-UTR	4.69133	21.52705	HepG2	FUBP3
chr22	41368589	41368654	+	3'-UTR	5.54569	19.58757	HepG2	SUB1
chr22	41368533	41368594	+	3'-UTR	6.10122	15.36878	HepG2	LARP4
chr22	41368594	41368652	+	3'-UTR	4.72206	13.09540	HepG2	LARP4
chr22	41368556	41368647	+	3'-UTR	5.22747	8.86741	K562	NOLC1
chr22	41349586	41349686	+	3'-UTR,CDS,intron-Proximal	3.47619	8.39123	HepG2	PRPF8
chr22	41368595	41368671	+	3'-UTR	3.12996	8.08133	K562	PABPC4
chr22	41347817	41347886	+	intron-Distal	4.12767	7.98928	HepG2	FAM120A
chr22	41349540	41349601	+	3'-UTR,CDS,intron-Proximal	3.47761	7.55775	HepG2	U2AF2
chr22	41347816	41347879	+	intron-Distal	4.81592	6.97401	HepG2	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for RBX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBX1 is not available on ENCORE database.
84 RBPs can affect the levels of RBX1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBX1 is not available on ENCORE database.

84 RBPs can affect the gene expression of RBX1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBX1	ENSG00000100387.8	365.15790	919.46990	-1.33230	34.10240	32.37910	HepG2	PCBP1
RBX1	ENSG00000100387.8	133.43200	482.68840	-1.85500	27.15470	25.36890	K562	HNRNPC
RBX1	ENSG00000100387.8	598.73130	1044.71920	-0.80310	18.42200	17.16670	HepG2	PUM1
RBX1	ENSG00000100387.8	585.06290	969.74270	-0.72900	12.21710	11.06150	HepG2	RECQL
RBX1	ENSG00000100387.8	662.54940	1041.22440	-0.65220	10.32020	9.39720	HepG2	NELFE
RBX1	ENSG00000100387.8	789.26130	477.37320	0.72530	9.55370	8.47580	K562	RBM15
RBX1	ENSG00000100387.8	626.85160	1127.62300	-0.84710	9.67590	8.46710	HepG2	MAGOH
RBX1	ENSG00000100387.8	249.64920	525.02130	-1.07250	9.59640	8.36960	HepG2	HNRNPC
RBX1	ENSG00000100387.8	596.72690	984.16340	-0.72180	9.02760	8.03450	HepG2	PUF60
RBX1	ENSG00000100387.8	542.01570	827.15240	-0.60980	8.92480	8.03440	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBX1 is not available on ENCORE database.

17 RBPs can affect the splicing of RBX1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RBX1	ENSG00000100387.8	chr22	+	41363802	41363888			41360050	41360121	41368479	41369313	-0.11600	0.00000	0.00003	excluded	HepG2	U2AF1
SE	RBX1	ENSG00000100387.8	chr22	+	41363802	41363888			41360050	41360121	41368479	41369313	-0.06400	0.00000	0.00007	excluded	K562	U2AF2
SE	RBX1	ENSG00000100387.8	chr22	+	41351290	41351450			41349558	41349637	41360050	41360121	0.11400	0.00000	0.00000	included	HepG2	HNRNPC
SE	RBX1	ENSG00000100387.8	chr22	+	41351290	41351450			41349558	41349637	41360050	41360121	0.32500	0.00000	0.00000	included	K562	HNRNPC
MXE	RBX1	ENSG00000100387.8	chr22	+	41360050	41360121	41363802	41363888	41347362	41347480	41368479	41369313	0.17700	0.00000	0.00000	1included	HepG2	U2AF1
MXE	RBX1	ENSG00000100387.8	chr22	+	41349527	41349637	41363850	41363888	41347362	41347480	41368479	41369313	0.05800	0.00000	0.00000	1included	K562	AQR
MXE	RBX1	ENSG00000100387.8	chr22	+	41360050	41360121	41363802	41363888	41349558	41349637	41368479	41369313	0.16800	0.00001	0.00027	1included	HepG2	U2AF1
MXE	RBX1	ENSG00000100387.8	chr22	+	41349527	41349637	41360018	41360121	41347362	41347480	41368479	41369313	0.69000	0.00001	0.00012	1included	K562	AQR
MXE	RBX1	ENSG00000100387.8	chr22	+	41349527	41349637	41359995	41360121	41347362	41347480	41368479	41369313	0.56000	0.00001	0.00021	1included	K562	AQR
SE	RBX1	ENSG00000100387.8	chr22	+	41360050	41360121			41347362	41347480	41363802	41363888	-0.05800	0.00002	0.00173	excluded	HepG2	SF3B4

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBX1

General Information

Functions

Localization

Domains (AlphaFold: RBX1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBX1 is not avaliable on ENCORE database.

22 proteins are bound to RBX1 RNA:

eCLIP assay for RBX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBX1 is not available on ENCORE database.

84 RBPs can affect the gene expression of RBX1 :

The Knockdown/knockout RNA-Seq assay for RBX1 is not available on ENCORE database.

17 RBPs can affect the splicing of RBX1 :

The Knockdown/knockout RNA-Seq assay for RBX1 is not avaliable on ENCORE database.