RBM48

General Information

Gene Name : RBM48
Gene ID : ENSG00000127993.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBM48)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBM48	ENSG00000127993.15	10.54	9.44	9.99	ENCSR000AEF
HepG2	RBM48	ENSG00000127993.15	4.84	9.01	6.92	ENCSR985KAT
K562	RBM48	ENSG00000127993.15	12.03	12.81	12.42	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBM48 is not avaliable on ENCORE database.

Proteins bound to RNA

RBM48 RNA is bound by 7 proteins.

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eCLIP assay for RBM48 is not avaliable on ENCORE database.

7 proteins are bound to RBM48 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	92165924	92166025	+	3'-UTR,intron-Distal	6.02134	14.01388	HepG2	U2AF2
chr7	92158213	92158317	+	5'-UTR,CDS,intron-Proximal	4.38541	7.53589	K562	AQR
chr7	92166161	92166211	+	3'-UTR,CDS,intron-Proximal	3.94786	6.17334	HepG2	U2AF2
chr7	92165760	92165823	+	3'-UTR,intron-Distal	3.78689	6.17334	HepG2	U2AF2
chr7	92163774	92163875	+	CDS	4.02340	5.94293	HepG2	BCLAF1
chr7	92158209	92158278	+	5'-UTR,CDS,intron-Proximal	4.03340	5.64484	HepG2	PRPF8
chr7	92163810	92163979	+	CDS	4.85210	5.14565	K562	UCHL5
chr7	92161740	92161814	+	CDS	3.37282	4.85828	HepG2	BCLAF1
chr7	92163875	92163958	+	CDS	3.76412	4.17155	HepG2	BCLAF1
chr7	92161858	92161933	+	CDS,intron-Proximal	3.02731	3.93669	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for RBM48 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBM48 is not available on ENCORE database.
42 RBPs can affect the levels of RBM48.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.

42 RBPs can affect the gene expression of RBM48 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBM48	ENSG00000127993.10	1600.84760	491.05400	1.70480	42.64660	40.58770	K562	AQR
RBM48	ENSG00000127993.10	536.65080	261.73490	1.03580	13.61880	11.82050	K562	U2AF2
RBM48	ENSG00000127993.10	819.15800	485.73100	0.75390	11.87810	10.63080	K562	DDX47
RBM48	ENSG00000127993.10	477.00460	220.32630	1.11430	10.70960	9.21970	K562	PRPF8
RBM48	ENSG00000127993.10	554.36140	309.53050	0.84060	8.84910	7.59280	K562	SRSF1
RBM48	ENSG00000127993.10	574.48230	281.01970	1.03150	7.29790	6.02420	HepG2	SNRNP70
RBM48	ENSG00000127993.10	711.00690	385.72840	0.88220	7.15390	5.57200	HepG2	CCAR1
RBM48	ENSG00000127993.10	532.05620	348.41690	0.61070	5.71250	4.90050	HepG2	ETF1
RBM48	ENSG00000127993.10	459.11430	292.89340	0.64840	5.50180	4.89240	HepG2	SRSF1
RBM48	ENSG00000127993.10	563.73470	297.71270	0.92100	5.89140	4.77390	HepG2	CNOT7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.

7 RBPs can affect the splicing of RBM48 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165862	92163715	92164284	92166164	92166848	0.15400	0.00001	0.00020	included	K562	AQR
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.27300	0.00007	0.00462	included	K562	TARDBP
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.29200	0.00039	0.01796	included	K562	PRPF8
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.09100	0.00041	0.07379	included	K562	APOBEC3C
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.21200	0.00088	0.05989	included	HepG2	HNRNPL
SE	RBM48	ENSG00000127993.10	chr7	+	92163715	92164284	92161717	92161863	92166164	92166848	-0.26800	0.00090	0.03442	excluded	K562	PRPF8
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165862	92163715	92164284	92166164	92166848	0.12100	0.00094	0.06053	included	K562	HNRNPL
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.23400	0.00146	0.03640	included	HepG2	HNRNPK
SE	RBM48	ENSG00000127993.10	chr7	+	92165747	92165788	92163715	92164284	92166164	92166848	0.15800	0.00333	0.09763	included	K562	PTBP1
SE	RBM48	ENSG00000127993.10	chr7	+	92163715	92164284	92161717	92161863	92166164	92166848	-0.08500	0.00570	0.05176	excluded	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBM48

General Information

Functions

Localization

Domains (AlphaFold: RBM48)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBM48 is not avaliable on ENCORE database.

7 proteins are bound to RBM48 RNA:

eCLIP assay for RBM48 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.

42 RBPs can affect the gene expression of RBM48 :

The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.

7 RBPs can affect the splicing of RBM48 :

The Knockdown/knockout RNA-Seq assay for RBM48 is not avaliable on ENCORE database.