RABEPK

General Information

Gene Name : RABEPK
Gene ID : ENSG00000136933.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RABEPK)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RABEPK	ENSG00000136933.16	20.47	20.85	20.66	ENCSR000AEF
HepG2	RABEPK	ENSG00000136933.16	63.14	52.15	57.64	ENCSR985KAT
K562	RABEPK	ENSG00000136933.16	38.07	39.91	38.99	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RABEPK is not avaliable on ENCORE database.

Proteins bound to RNA

RABEPK RNA is bound by 7 proteins.

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eCLIP assay for RABEPK is not avaliable on ENCORE database.

7 proteins are bound to RABEPK RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	127982703	127982749	+	intron-Distal,intron-Proximal	5.40779	15.33546	HepG2	SF3B4
chr9	127982703	127982759	+	intron-Distal,intron-Proximal	5.69946	10.52887	K562	SF3B4
chr9	127966999	127967056	+	intron-Distal	3.59607	9.50668	HepG2	PTBP1
chr9	127966949	127966999	+	intron-Distal	3.42234	7.65224	HepG2	PTBP1
chr9	127963049	127963142	+	5'-UTR,CDS,intron-Proximal	4.21077	7.63469	K562	DDX3X
chr9	127962871	127963014	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76020	5.90734	HepG2	DDX3X
chr9	127969900	127970016	+	CDS,intron-Proximal	3.55866	5.14253	HepG2	GRWD1
chr9	127982874	127982961	+	3'-UTR,CDS	3.03223	4.96088	HepG2	GRWD1
chr9	127963050	127963125	+	5'-UTR,CDS,intron-Proximal	3.39775	4.75864	HepG2	DDX3X
chr9	127965305	127965360	+	CDS,intron-Distal,intron-Proximal	3.75864	4.68902	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for RABEPK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RABEPK is not available on ENCORE database.
100 RBPs can affect the levels of RABEPK.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.

100 RBPs can affect the gene expression of RABEPK :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RABEPK	ENSG00000136933.12	452.97240	966.02940	-1.09260	18.77570	17.12440	HepG2	RBM25
RABEPK	ENSG00000136933.12	219.49730	619.12410	-1.49600	18.48390	17.00190	HepG2	SUPV3L1
RABEPK	ENSG00000136933.12	704.63860	1196.46510	-0.76380	16.09330	15.14740	HepG2	SRFBP1
RABEPK	ENSG00000136933.12	570.00070	1059.31890	-0.89410	16.16040	15.11860	HepG2	RBM22
RABEPK	ENSG00000136933.12	709.57690	350.27180	1.01840	16.46150	15.09350	K562	FXR1
RABEPK	ENSG00000136933.12	286.68750	731.81850	-1.35200	15.87860	14.29380	HepG2	FIP1L1
RABEPK	ENSG00000136933.12	398.86980	895.14200	-1.16620	15.06540	13.57560	HepG2	G3BP1
RABEPK	ENSG00000136933.12	597.49990	1064.42100	-0.83310	13.87530	12.63180	HepG2	QKI
RABEPK	ENSG00000136933.12	588.64170	982.81970	-0.73950	13.37950	12.35710	HepG2	PTBP1
RABEPK	ENSG00000136933.12	195.28750	479.62720	-1.29630	13.91460	12.30490	HepG2	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.

25 RBPs can affect the splicing of RABEPK :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RABEPK	ENSG00000136933.12	chr9	+	127982605	127982676			127975648	127975801	127982817	127982979	0.09000	0.00001	0.00306	included	HepG2	TIA1
MXE	RABEPK	ENSG00000136933.12	chr9	+	127969842	127970000	127982824	127982979	127965286	127965345	127990188	127990338	-0.24600	0.00001	0.00082	2included	K562	PPIL4
MXE	RABEPK	ENSG00000136933.12	chr9	+	127969842	127970000	127982817	127982979	127965286	127965345	127990188	127990338	-0.24100	0.00001	0.00083	2included	K562	PPIL4
SE	RABEPK	ENSG00000136933.12	chr9	+	127975648	127975801			127969842	127970000	127982817	127982979	-0.16300	0.00003	0.00712	excluded	HepG2	TAF15
MXE	RABEPK	ENSG00000136933.12	chr9	+	127969842	127970000	127982605	127982676	127965286	127965345	127982817	127982979	0.17300	0.00003	0.00105	1included	HepG2	U2AF1
MXE	RABEPK	ENSG00000136933.12	chr9	+	127975648	127975801	127982817	127982979	127969842	127970000	127990188	127990338	0.21300	0.00003	0.00192	1included	K562	HNRNPUL1
SE	RABEPK	ENSG00000136933.12	chr9	+	127982817	127982979			127969842	127970000	127990188	127990338	0.22300	0.00004	0.00456	included	HepG2	SRSF9
SE	RABEPK	ENSG00000136933.12	chr9	+	127975648	127975801			127969842	127970000	127982817	127982979	-0.12900	0.00005	0.00142	excluded	K562	PUS1
MXE	RABEPK	ENSG00000136933.12	chr9	+	127982817	127982979	127990188	127990338	127975648	127975801	127994874	127995024	0.19000	0.00005	0.00352	1included	HepG2	XRN2
SE	RABEPK	ENSG00000136933.12	chr9	+	127975648	127975801			127969842	127970000	127982817	127982979	0.15300	0.00010	0.01328	included	K562	HNRNPUL1

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RABEPK

General Information

Functions

Localization

Domains (AlphaFold: RABEPK)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RABEPK is not avaliable on ENCORE database.

7 proteins are bound to RABEPK RNA:

eCLIP assay for RABEPK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.

100 RBPs can affect the gene expression of RABEPK :

The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.

25 RBPs can affect the splicing of RABEPK :

The Knockdown/knockout RNA-Seq assay for RABEPK is not avaliable on ENCORE database.